Dwarkesh Podcast - David Reich — How one small tribe conquered the world 70,000 years ago
Episode Date: August 29, 2024I had no idea how wild human history was before chatting with the geneticist of ancient DNA David Reich.Human history has been again and again a story of one group figuring ‘something’ out, and th...en basically wiping everyone else out.From the tribe of 1k-10k modern humans who killed off all the other human species 70,000 years ago; to the Yamnaya horse nomads 5,000 years ago who killed off 90+% of (then) Europeans and also destroyed the Indus Valley.So much of what we thought we knew about human history is turning out to be wrong, from the ‘Out of Africa’ theory to the evolution of language, and this is all thanks to the research from David Reich’s lab.Buy David Reich’s fascinating book, Who We Are How We Got Here.Watch on YouTube. Listen on Apple Podcasts, Spotify, or any other podcast platform. Read the full transcript here.Follow me on Twitter for updates on future episodes.SponsorThis episode is brought to you by Stripe, financial infrastructure for the internet. Millions of companies from Anthropic to Amazon use Stripe to accept payments, automate financial processes and grow their revenue.If you’re interested in advertising on the podcast, check out this page.Timestamps(00:00:00) – Archaic and modern humans gene flow(00:20:24) – How early modern humans dominated the world(00:39:59) – How bubonic plague rewrote history(00:50:03) – Was agriculture terrible for humans?(00:59:28) – Yamnaya expansion and how populations collide(01:15:39) – “Lost civilizations” and our Neanderthal ancestry(01:31:32) – The DNA Challenge(01:41:38) – David’s career: the genetic vocation Get full access to Dwarkesh Podcast at www.dwarkesh.com/subscribe
Transcript
Discussion (0)
Today I have the pleasure of speaking with David Reich, who is a geneticist of heart ancient DNA at Harvard.
And David's work and his lab's work and his field's work has transformed,
like really transformed our understanding of human history and human evolution.
I mean, it's very fascinating stuff for many perspectives.
In its own light, it's very interesting.
From the perspective of AI, which I plan on asking you about,
it's interesting to understand human evolution and what that implies about what
the future of AI might look like.
Anyways, I'll stop doing the introduction.
David, we were just chatting before we started recording
about what new information you've been studying
since the book came out about archaic humans
and the relationship between modern humans and Neanderthals.
Can you explain again what you're studying these days?
Well, I think what's very interesting
is that what we have data from now are modern humans,
the sequences of people living today.
And we also have data from Neanderthals
who are archaic humans who lived in Western Eurasia
for the last couple of hundred thousand years,
and we have now sequences from many Neanderthals.
And we also have DNA from Denisovans.
Denisovans are archaic humans
who were discovered from the DNA,
from a fingerbone that was found in a cave in Siberia,
not anticipated to be a new group of humans,
but were sequenced.
So we have DNA from these different sources,
plus bits of DNA from these sources
mixed into modern populations.
And based on this,
in the last 10 years or 14 years, we collectively have been piecing together an understanding
of how modern humans are related to our closest relatives who are now no longer with us in unmixed
form, the Neanderthals, Denisovans, and maybe others who are no longer not yet sampled.
And the model that we have is really a model based on accretion. So we start with the modern humans
and then we add the Neanderthals once we obtain that sequence and we add the Denisovans.
and then the model doesn't quite fit, and we add other mixture events to make the model fit.
And at this point, there's a number of these mixture events that seem increasingly implausible.
They feel to me a little bit like, I don't know if you know the history of models of how the Earth and the Sun relate to each other in ancient Greek times,
but there's these epicycles that were attached by the Greek Hellenistic astronomer Ptolemy to make it still possible for,
to describe the movements of the planets and the stars, given that a model where the sun revolved
around the earth.
And we've added all of these epicycles to make things fit.
And one wonders whether there's some pretty fundamental differences that might explain the patterns
that are observed.
So just to give you an example of this, that standard model is basically this, that modern
humans separated from a group that is ancestral to Denisovins and Neanderthals, these two
groups for which we have sequences, somewhere between maybe 500 to 750,000 years ago.
That's what the genetic papers beginning in about 2012 and 2014 said, and that's still used
as the explanation for the vast majority of the genealogies, the DNA lineages connecting
them. So maybe except for 5% of the DNA, that's what we think is going on. Modern humans
are one group, and then there's a sister of modern humans, the Denise van Neanderthal group,
and they separated 500 to 750,000 years ago.
But what's become very, very clear in a really important series of papers since that time
is that, in fact, there are exceptions to this.
And one exception to this is the mitochondrial sequence,
what you get from your mother and she gets from her mother and so on, going back in time.
And there, the shared ancestor between Neanderthals and modern humans
is only maybe three or 400,000 years ago,
which is after the split that's very well estimated from the whole genome.
And what we've also learned is that's also true for the Y chromosome.
So that's inherited from your father and his father and so on.
And that's true, too, is only maybe three or 400,000 years separated between the Anderthals and modern humans.
And like the mitochondrial DNA, the Denisevins are much more distant, maybe 800,000 years, 700,000 years, a million years.
So the story told by these two parts of the genome is one that's really, really different from the rest of the genome and incompatible with the main story, two recent sharing.
And we know in these papers that maybe a few percent, five percent, three percent, eight percent
of the DNA of Neanderthals comes from a gene flow event, a migration event into the ancestors
of Neanderthals from the modern human lineage a few hundred thousand years ago.
And it's tempting to think that both the Neanderthal, mitochondrial DNA and Y chromosome come from
that event.
But the probability of that happening by chance is only 5 percent squared, which is a very,
very small number.
and people have evoked epicycles, for example,
natural selection for the mitochondrial DNA coming from modern humans,
or natural selection coming from the Y chromosome coming from modern humans,
somehow being more advantageous and pushed up in frequency.
But that would have to really happen on both these parts of the genome
to produce this pattern, and it just seems surprising.
So what's been put together is a complicated model and epicycles,
ideas like natural selection, to kind of make it work.
It's not impossible.
It may be the case, but one wonders whether profoundly different models might actually explain the data.
And so that's something that we and others have been thinking about.
Can there be other models?
An example of another model that might be able to explain the data that we've been playing with
is one where there's much more DNA in Neanderthals from modern humans than the three or five percent that's been estimated.
And we can get such models to fit, but here it's 30 percent or 50 percent or 70 percent.
So in that view, Neanderthals and Denisovans are not sisters.
In fact, modern humans and Neanderthals are just as qualified to be sisters as Neanderthals and Denisovans.
And in that case, maybe it's not clear what's modern and what's archaic.
Are modern humans archaic?
Our modern humans modern?
Or Neanderthals are modern?
What's also become clear in the last few years in a separate threat of research, not based on ancient DNA,
but based on using more and more powerful and sophisticated ways,
of pattern finding and modern data is that modern humans are also highly substructured.
We can see that even without having ancient DNA yet.
Of course, once one has ancient DNA, it's so much clearer.
But it's very clear that you can't explain, for example, modern African DNA without invoking
very extreme substructure as deep as the mixtures that produced Neanderthal, contributed and mixed
between Neanderthals and modern humans.
And so that mixture, which of those groups were archaic, which of them were modern,
were they both archaic, was one of them modern, was one of those more closely related to Neanderthalphal,
and the possibly higher proportion of ancestry.
It's not obviously wrong that the model's very, very different from the standard one that we currently have.
Interesting.
So, I mean, from your book, I remember that there are lineages of modern humans that are over 200,000 years separated from other groups, like the Sondhunter gatherers from everybody in Eurasia today, or everybody descended from Eurasia.
So then you're saying that 100,000 years before that is when we have a sister lineage with Neanderthals.
Actually, I'm not sure what the new findings we're finding about how closely related Neanderthals are to us and how much mitochondrial and microemasoned DNA they share.
What model do you think is the most plausible to explain why there's so much shared ancestry?
I'm very agnostic. I really, really don't know.
But the ones you, sorry, the models you were just talking about, it sounded like you thought they were.
Low probability. Is there one you think is like more...
I think the models that are considered to be standard dogma are now low probability.
Yeah.
So there's a standard dogma that's developed over an accretion of papers where the data, the history gets patched.
So someone sequences a genome, someone performs an analysis, someone proves something that wasn't known before.
And so they, we claim a mixture event. We didn't know about it before.
An event that we didn't know before. And that gets patched onto the current model, which is now a series of patches.
And nobody has really rethought the whole thing very hard.
And the whole thing is not obviously very, very different.
So you can actually reassemble the whole model in a new way without doing it from the ground up or from the simple model up.
But in fact, thinking about it again and seeing if it can be all related in new ways.
And in fact, it might be actually quite different in the way that I just described.
Where did the gene flow between the most recent gene flow between Neanderthals and humans?
I guess not the most recent, because the most recent was 60,000 or whatever years ago,
but like the one you're referring to here, where physically did that happen?
Even that's not clear, but probably such a thing would have occurred somewhere in the Near East
or in Western Eurasia somehow.
And it's not even clear where the modern human lineage at that time was residing.
So probably the modern human lineage was leading to the great majority of the ancestors of people
today was in sub-Saharan Africa for the last 500,000 years, at least, and maybe might be much more.
Certainly, our main lineage was in Africa probably 3 million, 5 million, 7 million years ago.
But in a period between about 2 million to 500,000 years ago, I think it's not at all clear
where the main ancestors leading to modern humans were.
There were humans throughout many parts of Eurasia and throughout many parts of Africa
with a parallel increase in brain size and not obviously clear.
closer ancestrality to modern humans in one place than in the other, it's not clear where the main lineages were. Maybe they were in both places and mixed to form the lineages that gave rise to people today. So I think there's been an assumption where Africa's been at the center of everything for many, many millions of years. And certainly it's been absolutely central at many periods in human history. But in this key period when modern humans develop from homo habilis and homo erectus all the way to homo-hyddle brigensis,
and the shared ancestor of Neanderthals, modern humans, and Denisovans,
that time period, which is when a lot of important change happens,
it's not clear, as I understand it, based on the archaeology,
and also certainly based on the genetics where that occurred.
So can I just say with the audience what is so interesting here that we, I don't know,
we're humans.
And like, you would think one of the things history would have figured out is,
how did humans come to be, right?
Like, that's probably one of the biggest questions you could imagine asking of history,
of archaeology, of anthropology, of genetics.
And the fact that, I don't know, this is the thing, at least a conventional model is the thing
you're taught like third grade.
This is one of the first things you're taught about the world, right?
And the fact that many parts of it could be wrong or we're learning in greater detail
what those parts look like at the very least.
And we're doing that right now because of a new technology that's being used by labs like
yours.
I think that's really wild.
And I'm just thinking, like the audience might not be aware of how much of a change
this is in our understanding of the human past. And I just sort of really want to emphasize that.
So if the gene flow event you're talking about a few hundred thousand years ago happened
between quote unquote modern humans and Neanderthals happened outside of Africa, then did
that lineage go back to Africa and then come back out again? How do we think about it?
Well, the simplest version of this is that the main lineage leading to modern humans is in
Africa at this point. And Africa, as I understand it from talking about the archaeologists and the
climatologists, is that Africa and the Near East are continuous ecological spaces at certain periods
of time. And so there's no difference between what's now the Near East and Africa. The fauna and
the flora are pumped from Africa into the Near East or pumped from the Near East into Africa.
And so the African range goes into that region. And so it's a place of overlap between Eurasian,
fauna and flora and african flora and fauna and so that's a very natural place for interactions to
occur especially in periods of climate change animals for example from one region get pumped into the
near east and then in another period of climate change they get pumped into eurasia or the
rivers so because there's a land bridge during different climactic events there's always a land bridge
and but the the ecology with deserts and so on makes certain areas permeable or impermeable
And so in some periods of time, the Near East gets reclaimed by Eurasia somehow ecologically.
And in other periods of time, it gets reclaimed by Africa.
So it's kind of a place of movement of flora and fauna out and in again and again and again and again.
So I think the simplest model, I'm not an expert on this, but the simplest model would be one in which an extension of the modern human substructure leading to us, the ones that some of those lineages coalesced to foreign people living today, the great majority of the answer.
ancestors, gets into the Near East several hundred thousand years ago, and then mixes there with
the ancestors of what we have now sequenced as Neanderthals and the skeletons that we have now
are Neanderthals, and that that gene flow event occurs there, and it's modern humans from Africa
or the part of the African population that extends into the Near East, pushing into Neanderthals
at that time. We have evidence of modern human incursions since that time into Neanderthal,
parts of Western Eurasia, also in intermediate periods.
from the skeletal record and maybe even claims recently in the DNA data.
But certainly the genetic data attest to a very strong event a few hundred thousand years ago.
So how many humans are around at this time?
Because to the extent that all modern humans are descendants of this group,
where there's like, where there just, like how many different groups of humans are there such
that by groups I don't mean genetically distinct necessarily, but just like separate locations
or so forth, such that there was enough gene flow between all of them that there's a shared
common descent.
I don't know.
So, like, one of the things that is really interesting, we just published a couple of years ago
a paper on relatively recent hunter-gatherer populations from mostly eastern and central Africa.
And this included individuals going back up to about 15,000 years ago, which is the oldest
DNA from sub-Saharan Africa, which is not very old at some level in order to be able to discern
these deep population exchanges that really we would like to know in order to understand human
evolution, which really we would like to be able to probe two million years ago. We can't.
But with 15,000-year-old individuals, what you see is many, many groups at many, many places,
all with very reduced diversity. So, in other words, they look like they're living in tiny
populations of hundreds of people and not exchanging DNA with each other very often at all
over time. And this is again and again, we see this again and again. And so,
So if you take such a population, put it into a model and say it's this small, what will happen
over time?
It will lose its diversity over time.
It will become very non-diverse.
So over time, Africa will have very little diversity.
But of course, Africa today has great human diversity in it.
And so what seems to be happening is that the whole continent of sub-Saharan Africa and probably
Eurasia at this time is full of hundreds, thousands, tens of thousands of little groups that
are communicating hardly at all with each other, are in very small sizes, are loose.
losing diversity. And when we sample them, this is a group that leaves hardly any descendants
at all, maybe none, amongst modern people. And what's actually happening is occasionally
these groups merge together and recharge their diversity. So the diversity is maintained in the
ensemble of rarely mixing groups. And you can't really appreciate the diversity by studying
any one group, but rather you actually have to think about the whole ensemble of hundreds
or thousands, of tens of thousands of them as preserving the diversity. So there's some question
about the migration rate amongst these groups, which are an archipelago of little groups losing
diversity, going extinct at some level. But together, there is enough re-contact to recharge the
diversity and create the incredibly diverse populations you see today, for example, in southern Africa
or Western Africa or Central Africa. I want to go back to what you were saying, that for hundreds
of thousands of years, not just with modern humans, quote-unquote, but with even the so-called
archaic humans with Neanderthals and other species, that there's been
selective pressure for larger brains.
And this is, despite the fact that they're in different parts of the world, if I'm right,
so like, if you're in Eurasia or if you're in sub-Saharan Africa, either way, somehow the
these like, finally you've got to a state where there's, the niche we're in rewards marginal
increases in intelligence and is willing to bear the cost of that and keep like, keep chugging
on that variable. Do we know why that was the case? What was happening in the world or what was
happening with maybe primate brains such that the selective pressure was turning towards greater
intelligence? So that's super interesting question. And I think there's a lot of insight and
ideas about this topic. And I think it's an area to which genetics right now has contributed
almost nothing. So I think, you know, in the book that I have this book that I wrote who we are and how we got
here, ancient DNA in the new science of the human past.
And it's a bit of a misleading title or a kind of bait and switch title.
And the way in which it's a bait and switch title is you might read it thinking you're going
to learn something about how we became whatever we think is distinctive about us relative
to other animals.
And so I try very early in the book to say that, unfortunately, with the genetic data available
up to this point, we don't really have very meaningful insights about what makes us distinct,
how we became to be distinct from other animals,
but what I'm going to tell you about
is how we came to be,
how we are from another perspective
through mixture and migration.
So it's very surprising how we came to be,
how we are through migrations and mixtures.
A lot of people used to think that we were not mixed,
but in fact it's been mixture again and again
in the past and many populations we didn't anticipate.
But with regard to your question,
which is how it is that humans evolved
into a distinctive niche which includes having a strong reliance on a large brain, putting a large
amount of metabolic energy into the brain, brain relative to body size much bigger than is in the
past.
I have two things that I wanted to, that sort of are striking to me about that.
One of them is that I think genomics actually has promised to learn about those things,
and I think we are potentially on the verge of learning a lot about those things.
I just think we don't have important new qualitative insights about that.
topic right now. The other is that the large brain was already in place prior to the separation
of Neanderthals and modern humans and maybe Denisovans as well. So already the common ancestors
of Neanderthals and modern humans probably had a brain as large as ours. It's not obvious that there's
parallel evolution in multiple parts of the world. It may be that it's a sufficiently interconnected
group that it's not a parallel evolution event, but a single process.
So many questions there. One is when you say that there's a single interconnected population,
are you referring to basically all of not only Eurasia but also Africa?
Possibly.
So the whole, basically the whole world, even hundreds of thousands years ago, can be thought
of as having chain flow and being one global population.
I think that's almost certainly true.
We don't yet know the frequency of exchange between Africa and Eurasia.
But this is two million years.
It's a lot of time.
You know, Paul Salopec is like walking around the planet in like seven years or something like this.
Like, people move incredibly quickly.
And Africa and Eurasia are not really separated by barriers that mean anything very important to a species like ours over periods of even dozens or hundreds or thousands of years.
So the idea that being in Eurasia or Africa is such a profound barrier that you would not expect people to move from one region to the other in periods of tens of thousands of years.
hundreds of thousands of years. That's a strange idea. That's fascinating. So people, quote
unquote, by the way, it's so interesting that like it's hard to think of the correct terminology of
like when we say people, which kind of people are we talking about. But anyways, so
the ancestors of modern humans are at least in a position to have gene flow with other archaic
humans in the Near East, but at least it doesn't seem like they expanded out hundreds of
thousands of years ago. And if you're right that they had the brain size, or at least,
you know, like a lot of the brain size had already been accumulated before this with Neanderthals,
then they should have been pretty smart hundreds of thousands of years ago, but they're not
expanding out. And then something happened 60,000 years ago. And then they like, this group that's
descended from the people in sub-Saharan Africa just explodes all across the world. So something
seems like it changed. What do you reckon it was? So this is outside my area of expertise of
very much like a scientist right here.
But I'm very sympathetic to the idea that it's hardly genetic.
So I think that this is cultural innovation.
It's very natural to think that this is cultural innovation.
And humans sometimes develop a new technique of storing information, sharing information, and so on.
For example, writing, which allows you to record collective knowledge in a library or computational knowledge or large storage.
devices and so on and so forth, language, conceptual language, which allow you to create a cultural
body of knowledge.
You're talking in the book about how the Fox P2 gene, which modulates language ability,
not only in humans but other animals, obviously all living humans have it.
And so it's at least 200,000 years old when the human lineage starts to split off.
So everybody has language.
So it can't have been, like, what do we think it was?
Well, I don't know what we had, what the language was.
It's almost certainly the case that Neanderthals were using sounds and communicating in ways
that are probably pretty complicated, complex, and amount to some kind of language.
But some people think that language in its modern form is not that old and might coincide
with the later Stone Age of Upper Paleolithic Revolution 50 to 100,000 years ago and might be
specific to our lineage, and that there might be a qualitative shift in the type of language that's being used.
There's been one incredibly interesting and weird.
line of genetic evidence that was so weird that a lot of people I know dropped off the paper,
they just didn't want to be associated with it because it was so weird, and they just thought
it might be wrong. But it's stood up as far as I can tell, it's just so weird. So this is one
of the things that surprises that genetics keeps delivering. I think that that's probably going to
come across in this conversation, which is I am pretty humbled by the type of data that I'm
involved in collecting. It's very surprising this type of data. Again and again, it's not what we
expect. And so it just makes me think that things are going to be surprising the next time we look
at something that's really not looked at before. So the line of evidence I'm talking about is one based
on epigenetic modification of genomes. So just to explain what that means, the genome is not just a
sequence of letters, DNA letters, adenines, thymines, guanines, and cytosine, ACTG.
It also is decorated in anybody's cells by modifications that tell the genes when to be on
and off in what condition. So an example of such a modification is methylation in cytosine-guan
pairs. So this turns down a gene and makes it not functional in certain tissues. And this
This methylation is bestowed by cellular environments and differs in different cells and also in
different species to identify which genes are more active or more passive.
And it's not directly encoded by the ACTGs locally.
It's encoded by something else and sometimes even passed on by your parent directly.
So it's really very interesting.
So this can be read off ancient genomes.
The methylation pattern survives in Denisovan and Neanderthal genomes, and we can actually
learn which genes were turned down and turned up.
So work by David Gokman and Lirond Carmel and colleagues
created these maps of where in the Neanderthal genome,
where in the Denisovan genome,
and where in modern human genomes genes are turned on and off.
And there's a lot of technical complexity to this problem,
but they identified differentially methylated regions,
several thousand parts of the sections of the genome
that were consistently and very differently turned down or turned up
in Neanderthals and modern humans.
And when they looked at the set of differentially,
methylated region, roughly a thousand of them, that were systematically different on the modern
human lineage and asked what characterized them was their particular biological activities that was
very unusual on the modern human-specific lineage. There was a huge statistical signal that was
very, very, very surprising and very, very unexpected, and it was the vocal tract. So it was the
laryngeal and pharyngeal tract. And because you can actually learn from little kids with
congenital malformations when you knock out a gene, when a gene gets knocked out by an inborn error
of genetic transformation, of genetic inheritance, kids will have, for example, a face that looks
different or a vocal contract that looks different and so on. You know what the effect of
knocking out these genes is. We can actually imply directionality to how the modern human
specific changes are. And the directionality is to change the shape of the vocal tract,
which is soft tissue, not preserved in the skeletal record,
to be like the way ours is distinctive from chimpanzees.
So in the shape that we know is very helpful
for the articulation of the range of sounds we use
that chimpanzees don't have in their laryngeal and pharyngeal tract.
So even though we don't have surviving hard tissue like skeletons
from this part of the body,
we now have this methylation signature,
which suggests that these changes have occurred specifically on our lineage
and are absent in both the neanderthal and Denisovan
lineages. So if you think this change in the vocal tract is important in language, which
seems possibly reasonable, then maybe that's telling you that there's very important changes
that have happened in the last half million or a few hundred thousand years, specifically on
our lineage that were absent in Neanderthals and Denisovans.
But what's even, what's significant is that the, so there have humans have, to the
extent that humans have had it for hundreds of thousands of years, it's not clear then why humans
weren't able to expand out of Africa and...
We don't know that.
We just know that today we have it.
So it could have been only a couple of hundred thousand years ago or 50, or 100,000
years ago that these changes happened.
But then we know all modern humans have them and modern human, different groups of modern
humans have split off...
Separate 200,000 years ago.
Right.
So we know that it's at least that old, right?
Right.
Right.
Although there is gene flow between all groups of modern humans, at least at low levels,
going to 100,000 years.
It's just most of the separation between...
on other groups happens 200,000 years ago.
Let me just like motivate for the audience why this is so fascinating.
First of all, it's obviously so interesting, like what happens such that 70,000 years ago,
there are half a dozen different human species all around the world that are pretty different.
And then fast forward to now, there's one.
The fact that that happened is kind of wild.
But so it's interesting just from that.
But another reason that makes it interesting for me is because I talk to these people who talk about AI.
and want some of them have a very strong perspective
that you just make the model bigger
and the thing just wants to learn
and so you just make it bigger,
you give it more space and it'll just become intelligent.
And one of the pieces of evidence they use for this
is that something, something happened with human brains,
dot, dot, dot, dot, dot, dot, dominating the entire Earth.
And so that's the perspective that like you make these AI models bigger,
dot, dot, dot, dot, dot, you know, like something very powerful
is going to come on the other end.
To the extent that that story is accurate,
or inaccurate might actually have interesting implications for AI, which is sort of wild, right?
Like our anthropology or genetics about the ancient world has like some Bayesian update on how
well we think these AI models will do in the future?
So one thing that what you're saying makes me think about is that it doesn't map on in a
simple way as an analogy.
So one of them is that the human brain is maybe only three times larger than that of a chimpanzee.
and that's not the kind of increase that compute ability has had since, you know, 40 years ago or something like that, which is many, many orders of magnitude increase.
Not a factor of three, but many, many orders of magnitude increase.
In fact, I'm aware of studies that have, for example, compared raw computability of chimpanzee babies to human babies.
In fact, it's similar.
For example, ability to solve logic puzzles is pretty similar between chimpanzees and humans.
And some people argue that humans are not even more intelligent than chimpanzees at some fundamental ability to compute.
And that what makes human distinctive is social learning abilities and that that's where a lot of our ability has gone, our ability to see other people, to empathize with other people, to copy other people, to incorporate bodies of information that are learned by other people.
And so I am not an expert in this topic, but it's a very appealing group of ideas that the adaptations that humans have are ones that allow.
allow us to access a rich amount of shared knowledge and not just to rely on figuring out each
thing. So that's not obviously the same as just add more computability, but maybe it has some
similarities. Yeah. So I guess I still don't understand is the answer we just don't know what
happened 60,000 years ago, such that before humans and other modern humans and other types of
humans were interacting, but no one was in a dominant position, at least in Eurasia.
And now humans, not only do we dominate, but like, in fact, we drive them to extinction.
There's, none of them are around at all.
Do we have any idea what would change between that time?
So the model that, this is really outside my expertise, but ideas that have been floated,
and I will summarize them possibly badly, are that in every group of human beings of hundreds of people,
which is the size of a band, or sometimes a thousand of people,
they accumulate shared cultural knowledge,
shared knowledge about tools,
knowledge about life strategies,
and they build up a shared knowledge more and more and more and more.
But if you have a limited-sized group of people
that's not interacting with the sufficiently large group of people,
either occasionally this group has a information loss.
You know, there's a natural disaster.
Key elders in the group die,
and knowledge gets lost,
and there's not a critical mass of,
share knowledge. But once it goes above some kind of critical mass, the group can get larger,
the amount of share knowledge becomes greater, and then you have a runaway process where
an increasing body of shared knowledge of how to make particular tools, how to innovate,
patterns of innovation, and so on, language, conceptual ideas run amok. So an example that
I've heard talked about in this context is what happened with, for example,
indigenous Tasmanians.
You probably know this story, but about 10,000 years ago,
the ancestors of people in Tasmania,
which is this large island south of Australia,
were continuous with the Aboriginal populations of Australia.
They had fire, they lost it.
And they lost fire because it got forgotten somehow,
and it's a cold place, and they just forgot it.
The cultural knowledge lost it.
So what you actually have in the world is,
50,000 years ago is tens or hundreds or thousands or tens of thousands of different human groups,
each of them possessing local knowledge, rarely exchanging with each other.
When we get lucky in ancient DNA and sample them, they're quite isolated from each other,
and they have reduced diversity in the last tens of generations.
The great majority of them go extinct.
The great majority of them are wiped out by encounters with natural disasters or other groups of humans or other animals.
And so what you have is a vast experiment with an archipelago of these groups.
And what might be happening is that you just have a process of accumulation of cultural knowledge and loss of cultural knowledge.
But since there's many of these experiments going on, maybe something takes off somewhere and maybe that's what happens 50 to 100,000 years ago.
And people who all have the capacity to do these things.
One thing I didn't realize until I read your book is how small the population that expanded out into Eurasia was.
and how small even generally human population was 50,000, 100,000 years ago.
And I remember one of the papers you cited said that there might have been a population bottleneck around this time period.
People talk about the toba eruption.
I don't know if that's a cause, but there's many potential causes.
But anyways, I think I remember somewhere that the ancestors of everybody in Eurasia was initially like 1,000 to 10,000 people would tell me like how small was a human population?
that was like the seed of this modern period.
So the bottleneck occurred, the bottleneck, by bottleneck, would mean founder event,
a relatively small number of people giving rise to a large number of descendants today.
It occurred well before the mixture with Neanderthals,
which is probably somewhere like 50,000 years ago,
plus or minus 5,000 years or something like this.
So we don't know where it occurred.
Maybe it occurred somewhere in Arabia.
Maybe it occurred somewhere in the Nile Valley.
Maybe it occurred somewhere else.
but maybe thousands or even tens of thousands of years before the encounter with Neanderthal
that pushed in some Neanderthal DNA into modern humans.
So one way to see this is, in fact, this was not an unusual thing, that this was not an unusual
thing to have a group with low diversity.
In fact, the great majority of African groups would have had very low diversity,
and it's just the one that started expanding into Eurasia also had low diversity,
but it was so successful it didn't mix with very many other groups and recharge its diversity
by remixing with other groups.
And maybe it also expanded inside of Africa.
So there's lots of reasons to think that the expansion of the early modern human group
outside of Africa would have been accompanied by a within Africa expansion of the same group
and that it would not have been unidirectional.
So one way to look at the expansion of modern humans into different parts of Eurasia
where we have data is almost as a kind of sort of forest fire of some kind
where it throws sparks into different parts of Eurasia
and interacts with the local people.
So, for example, if you look at the first modern humans
of African and Near Eastern origin
who get to, for example, Europe where we have the best data,
we have a number in Western Siberia
where we have the best data so far.
We have a number of these very early ones
from about 45,000 to 40,000 years ago,
which are called initial Upper Paleolithic.
And a good fraction of them have had Neanderthal ancestors
in their last two to four to eight generations.
So that's a kind of crazy result.
So we have only a couple of dozen or a dozen or so of these very early humans and a very large fraction of them recently mixed with Neanderthals in their ancestry.
So a model that might be explained the data is that you have sparks coming out of a kind of forest fire in the Middle East or the Near East of humans expanding.
They come in and they start going to places like Western Siberia or parts of South Asia or parts of Europe.
They mix with the Neanderthals and they produce these mixed populations.
like these initial upper Pellialyolithic groups,
we sample in the record,
and they all go extinct,
like including the modern human ones.
There's just extinction after extinction
after extinction of the Neanderthal groups,
of the Denisovan groups,
and of the modern human groups.
But the last one standing is one of the modern human groups,
and that's what we happen to see.
And so the interbreeding event that we see,
the great majority of the ancestors of modern humans,
for example, in Eurasia,
are not from the initial upper Paleolithic ones,
but from a later wave from the core in the Near East
after 39,000 years ago that re-people a place that's been sort of affected by these sparks coming
out of the same region, and those groups too disappear.
Oh, that's so fascinating.
So not only is a group that starts 60,000 years ago and eventually makes us around,
not only does that one not survive, but then the group that starts 39,000 years ago,
that one is replaced.
And then obviously we'll later talk about the amniah, and like, you can just keep going.
Then the hunter-gatherers were replaced 8,500 years ago by the,
farmers coming from the Near East and then after that by the Amnaya from the step.
Okay, so it is interesting that it just like group comes there is replaced by the next group.
That group stays there as replaced by the next group.
I don't know if that model.
I think that that's probably right at some important level.
I think it's not a triumphal march of superiority and inferiority with the group that now comes in having
advantages somehow establishing itself permanently.
I think that what you have is a very complicated situation.
of many people coming together and natural disasters
or encounter with animals or encounter with other human groups
resulting in an almost random process of who spreads
or who ends up on top and other groups coming in afterward.
And so it may be that from a big picture perspective,
you end up having African lineages spreading into these different parts of groups.
That's different parts of Eurasia.
That's certainly what happened.
But at a local level, I think it would be very difficult
to understand what's going on.
So yeah, the big picture is interesting in two ways. First, that you're not thinking crudely in terms of the major species or the major subgroups of humanity like Neanderthals, Denisovans and modern humans. It's like, no, in fact, even among these, there were so many subcategories of, you know, different groups in this archipelago. And then you, like, if you do a fine grade analysis, that's even more fascinating than that. And how much contingency and randomness there is in that process.
I think that's right. And, you know, there's lots of analogies that you have later. There's European farmers encountering step migrations. There's Native Americans encountering Africans and Europeans as they come from the old world. There's various other groups encountering other groups. And you have people who have cognitively or culturally all the capacity to thrive in other contexts, but just because of the nature of the interaction that happens, one group declines demographically and one group doesn't.
and it's just complicated.
So I don't think you should conclude necessarily.
It's very tempting to think that at some level it's innate biological.
I'm not trying to be politically correct, that it's innate some better biological hardware
that makes it possible for these African lineages to spread into Eurasia.
I have no good insight into that topic.
I don't think there's very good genetic evidence or any other kind of evidence to say
that that contributed in a very strong way.
I think that it's just complicated, and we certainly have many modern examples where people with better or more competitive cultural complexes encountering each other, and the ones that are more organized in a certain way sort of thrive somehow demographically more.
Yeah, okay, so let's jump forward to then, since you mentioned this, the way in which after the agriculture is developed in the Middle East, I don't know, 10,000, 12,000 years.
ago. And then after that, the way the Native Americans, the population of Native Americans declined
was because of disease. And one of the hypotheses that you talk about in the book is potentially
this happened with respect to people in Europe from the amniah with literally the bacteria
that causes the bubonic plague, Yersenia pestis. The question I'm trying to ask,
is the going back a bit.
So the James Scott, who I think just died a couple weeks ago in his book against the grain,
the whole book is like, you know, agriculture sucked, but we were forced to adopt it
because it allowed some humans to organize nation states that were very abusive,
but did allow them to get the barbarians and co-op them because they needed the labor to do this
monotonous activity.
And one of the things he talks about is, well, one thing I didn't realize until I read that book
is just how new all the diseases or most of the diseases that afflict humans today are,
everything from Colorado typhus to tuberculosis, if you just go down the list,
because of agriculture, because of domestication of animals, and because of the density that
created. And so the theory he says, talks about in the book, is that potentially the reason
the hunter-gatherers, the quote-unquote barbarians couldn't fight back against these early nation states
was because they were getting killed off by the diseases.
And I don't know how much evidence there is for this.
Basically, the question I'm trying to ask is the way in which Europeans encounter Native Americans in the new world, did that just happen again and again throughout history?
Basically, the way, if you go back to Europe 9,000 years ago or 5,000 years ago, is that just what human history has been like?
That wasn't a one-off event.
There's an amazing book by Kyle Harper called, I think it's called The Fate of Rome.
and it's an argument about the history.
He's a historian, a Roman historian.
And it's a history of three major plagues in the Roman period,
a couple of which are really not even very well known.
And argues that the decline of the Roman Empire
is due to just weakening as the result of plagues
and other climatic biological,
climatological worsening events.
And there is a lot of reason to think
that some of these events have been recurrent throughout history
and that it's not just a difference between farmers and hunter-gatherers,
but actually a lot of different types of interactions that are occurring.
So the example that you mentioned is something that's been a big shock from the ancient DNA revolution.
So this is now maybe eight years, nine years old.
So when the first large number of DNA sequences from people who lived five and six and four thousand years ago
from the in the step north of the Black and Caspian Seas and in Europe were being published about in 2015,
this group in Denmark led by S.K. Willerslev and Christian Christiansen and colleagues
looked at their DNA and they discovered in their sequence from the 100 or so humans they sequenced
that there was also pathogen DNA. And in 5 to 10 percent of the random people they sequenced around 4 or 5,000
years ago, there was Yersinia Pestis, which is the agent of the Black Death. But actually without the
without the plasmid
that contributes to bubonic plague
that's required for flea rat transmission
so it must have been, for example, pneumonic
plague with an aerosolized transmission
or something. But five to ten percent
of random
deaths means that actually the percent
of people who were dying must have been even
higher because they weren't detecting
everything that was there. So a study by
another group, Johannes Kraus
and colleagues, of people in
plague pits in London from the 1300s
epidemic, found that they only
when you apply this method to people we know died of black death,
you only find a quarter of the people.
So the rate was even higher.
And if people are bacteremic when they die,
if they have bacteria in their teeth,
they probably are almost certainly died of that agent.
So paper just came out a few weeks ago in Scandinavia,
looking at these tombs from about 5,000 years ago
of farmers who were just on the verge of encountering people from the step,
and a huge fraction of them have black death when they die.
They're buried in tombs,
a normal, even higher than five or 10%. So this whole pedigree with many, many generations,
so it's not all at the same time, just like the parents, generation and generations,
a very large fraction, like well more than 10%, have black death and have ursinia infection.
So it looks like this particular agent has been killing people for 5,000 years, four or 5,000
years in Western Eurasia, and in fact is killing like a scarily large fraction of the population.
Like, as a quantitative person, which I am reading this literature, I think people are
embarrassed by the implication.
The implication is that a third, a quarter, half of deaths in this entire period are from
this.
And people are just, it's so unbelievable, so ridiculous that such a high proportion of people
over such a long period of time are dying from this one agent, that people don't even say
it.
They just published one paper after the other, publishing more sequences, and they just don't think about the implications of such a high rate of death.
And yet, it's really hard to imagine that people have bacteria in their blood and they're not dying of these things.
It doesn't seem that people are ignoring the people are selectively picking tombs.
These are tombs that are buried properly.
They're not grave pits.
So the implication seems to be this one agent that we happen to be able to detect is killing a very large fraction of people in Western Eurasia over this period.
So what's the implication of that?
One thing is that maybe it seems to be coming from step rodents probably.
And so maybe the people on the step are somewhat more, I mean, they say it's still dying of it,
but somewhat more protected of it than it spreads into farming Europe maybe 5,000 years ago,
which is when we start to see it.
And maybe this results in disorganization of the population, giving such high rate of death.
And maybe it creates a type of situation that the Europeans encountered when they got to the Americas,
where societies were disrupted.
So in the last few years, we had COVID-19.
It killed a half percent of the world population
or something like that.
And it was so disruptive.
So this thing is killing a third of people
or half of people, you know, randomly,
randomly killing people with cultural knowledge,
randomly ripping into structures like in, you know,
I don't know, was it Montezuma died
or one of his parents, you know,
resulting in civil wars in the Inca
when the Europeans and...
encountered them, just disrupting the cultures that were there, maybe this would have created a
situation where there was disruption in the old ways of life and maybe combined with other
things or even just by itself could have created an opportunity for people to move in from
elsewhere, even though they were not as densely spread. Because the big observation we
haven't talked about, and it's something that we as an ancient DNA community have been looking
into again and again now and keep making progress on, is that about 5,000 to 4,500 years ago in Europe,
there's a radical transformation in the ancestry of Europeans.
An example of this is what happens in Britain.
So about 4,500 years ago, the farmers who are there,
they arrived there 6,000 years ago, they build Stonehenge.
The last big stones of Stonehenge go up 4500 years ago,
and then within 100 years, 90% of them are gone.
And they're replaced by migrants from the continent,
bearing majority ancestry from the step north of the Black in Caspian Seas.
This is one place where we know what happened very well,
But we see it all over Europe.
We see it in Spain.
We see it in Portugal.
We see it in the Netherlands.
We see it in Germany.
We see it in Czechia.
We see it in Italy.
We see it in Switzerland.
We see it everywhere.
This wave of people from the East arrives.
And it displaces these successful, impressive, densely packed farmers with new people who have this ancestry from the East, who are not as focused on farming, although some of them are as the people who came before.
This is so crazy.
So just for the audience, if you're keeping tally, this one bacteria, your sonopestis, is responsible.
I mean, we learned in grade school that it's responsible for killing a third of Europeans,
more recently causing the black death, right?
And there's even theories that this was, this helped with the Industrial Revolution because it drove wages up in Britain
and because of higher wages they had to make machines and dot, dot, dot.
Robert Allen, the economist, has a theory about this.
So potentially caused the Industrial Revolution.
It causes inflation.
So it ends, I mean, in the medieval one, creates a lot of inflation.
And the serfs, as I understand it, were sort of on fixed wages.
And so they had to be paid more.
It basically inflated out their sort of signorial responsibilities.
Yeah.
So that's one of my things.
The other is during the Bronze Age, it allows the step people basically to replace the existing hunter-gatherer or farmer population in Europe.
Like literally all of Europe is allows a population from the Eastern Steps.
to replace the existing people who build a stone edge
doing other things in Europe.
And the Kyle Harper's book talks about this
where the plague of Justinian,
I think the final one that killed off the empire,
was also Yersinia Festus.
Definitely.
That's documented with kinetics.
So the fall of the Roman Empire,
the entire, like twice the sort of,
or at least once the replacement of the population in Europe,
and it's the second time, you know,
basically like modernity happened afterwards.
It's crazy one disease,
and potentially the new world,
as well in terms of, I don't know how many people, what percentage of the debts in a new world?
It's estimated to be not the primary pathogen. But who knows? And in any case, I mean, there's others
too, right? So some of the other plagues in the Roman Empire are definitely not Yersinia.
So that's crazy that not only disease, but this one in particular has had this big a role in
human history. I'm curious if you can talk to, there's anthropologist and historians who have
different theories about what the early history of humanity look like. Basically, like,
what kind of gods did they worship? How big were the communities? What, um, um, and this informs
their political philosophy today. James Scott obviously being the main example here, right?
Uh, can you, does genetic shed any light on whether, for example, the, in fact, agriculture was
terrible for humans and the first nation states were abusive and so forth, or is this stuff that
is not available for ancient DNA?
We have indirect information about some of these things.
So one thing that you might hope to learn about is whether our genomes reacted to the innovation of agriculture in a disrupted way.
So you might think that our genomes would have been in some kind of steady state, sort of natural selection had adapted us to the previous environments.
We were in, and you might expect that in reaction to a change so economically,
dietarily,
cognitively transformative
as agriculture,
the genome might shift
in terms of how it adapts.
And so you might actually see that
in terms of adaptation on the genome.
You might expect to see a quickening
of natural selection or a change.
I don't think we know the answer yet
to whether that's occurred,
although they're beginning to be hints,
and we could learn that from the DNA data.
Hints in which direction?
So one question is,
so there's an increasing view
amongst geneticists and that natural selection is a process where there's relatively little
directional selection to adapt to new environments. One piece of evidence connected to this is
finding that there's very few genetic changes that are 100% different in frequency between, say,
Europeans and East Asians, or West Africans and Europeans or West Africans and East Asians,
if there had been genetic variants that had had modest selective advantages,
1%, half a percent, 2%, that's actually a lot.
But year by year, that had arisen.
And then that's in a few hundred generations,
they would have risen from very rare or two very common,
and in fact gone to 100%.
There's thousands of generations separating Europeans
and East Asians and West Africans and Europeans and so on.
So if that was a common process and evolution,
we would expect many genetic changes
to be 100% different in frequency between Europeans
and East Asians or West Africans,
we see almost none.
So what that suggests at some level is that there's not strong adaptation over the last 50,000
years, because if there was, we would have seen genetic variants driving to 100% frequency
difference across different groups around the world, which have hardly been connected
with each other genetically over the time frame that we're talking about.
We don't see those variants, so maybe selection hasn't been important.
But maybe over a shorter period of time, selection has quickened, and variants have started
rising in frequency in the last maybe a few hundred generations or something like that, and
might be able to appreciate that. So maybe we could see whether there's been a quickening of
natural selection over that time period. There's a question about, I think the view amongst
common trait geneticists is that we've been at a kind of steady state. We're almost where the
natural selection that does occur is just there pushing down slightly bad variance, not adapting to
new situation. We're at a kind of stable point. So it's not clear how that works, because over a scale of
two million years, we're clearly genetically quite different from our ancestors.
Our brains are bigger. We do some things differently. Our proportions are different.
And yet, over the last 200,000 years, we are not profoundly different. There's not genetic
changes that differ dramatically across population. So it's like a kind of disconnect.
It's tempting to think evolution has stopped from one perspective because there's so little
fixed differences. But on the other hand, somehow there are different.
Somehow, if you look in the last 10,000 years in West Eurasian DNA, which we're doing now,
it looks like a lot of changes happening.
So it's a very confusing situation.
It feels like we don't really understand what's going on, but there's a lot to learn.
Do you have a sense of what, because obviously 10,000 years we're talking about the beginning
of agriculture?
Yeah.
Do you have a sense of what the changes might look like, or is it too early to tell?
So we, I mean, we're working right now on a study which is documenting changes over the last
10,000 years in Europe and Western Eurasia based on tracing.
changes in about 8,500 high-quality DNA sequences from people from this period that
have been collectively accumulated by us and others. So we've been working very hard at this,
led by Ali Akbar in my group. And we think we have many, many hundreds of places where
there's been very strong change in frequency over time, where we're confident of. And we think
there are many thousands that we can see traits of.
That is, there's, the whole genome is seething with these changes
in this time of period, in this period.
Can you give us a sneak peek on,
do we know what penotype, any particular ones who are responses?
So it's very clear that there is an extreme over-representation
of change on variants that affect metabolism and immune and immune traits.
And so if you look at traits that we know today,
affect immune disease or metabolic disease,
these traits are highly overrepresented
by a factor of maybe four
in the collection of variants that are changing rapidly over time.
Whereas, if you look at traits that are affecting cognition,
that we know in modern people modulate behavior,
they are hardly affected at all.
That is, selection in this last 10,000 years,
doesn't seem to be focusing, on average,
on cognitive and behavioral traits.
It seems to be focusing on immune
and cardiometabolic traits, on average, with exceptions.
But on average, there's an extreme over-representation
of cardiome metabolic traits.
The immune thing makes sense, obviously, more diseases.
In what direction is the metabolic?
So one example of this is that there's very clear
downward selection against body fat
and against predisposition to high body.
body madison, dex predisposition to what today manifests itself as type 2 diabetes.
So that genetic combination in West Eurasia has been pushed down again and again over the last
10,000 years under the pressure of natural selection without a doubt in its action on many,
many independent genetic variants, all pushing in the same direction in an overwhelmingly,
statistically significant way. So one possible interpretation of this, and this is speculative,
is that you're shifting from a mode of survival that's more feast and famine to one where food is more regular and it's not as advantageous to store fat.
And so their selection against sort of fat storage capacity.
That sort seems to point against the narrative that agriculture was terrible.
And, you know, if there had to be selection against storing fat, that seems to suggest that in fact, yeah, things must have been pretty good.
Well, on a time scale, I mean, selection acts, I don't know how you think selection acts,
but at some level, it could be terrible on the individual level and good on the population level.
So I think that, you know, I'm not doubting the evidence that you're, I think, may be referring to,
which is that skeletally, there's a lot more sort of skeletal-unwell people associated with the beginning of agriculture
than there are in the hunter-gatherer period.
And I think on an individual level, life could have been experienced more harshly.
But in terms of sort of survival, you know, people have, different animals have strategies of
investing less than they're young, but having many more young, or investing more in their young
and having, you know, fewer young.
And maybe the hunter-gather strategy might be the latter, and the farmer's strategy might be having
more young and some of them survive longer or something, more of them survive.
And on average, over a lifetime, there might be a stable enough food.
that if you don't rely on on such adaptations, it might be better.
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So one thing I'm very curious about is whether we have any sense of what it look like when different populations came into contact with each other.
Because in many of these cases, you're talking about 90, 95% of the population being replaced to the extent that sometimes you refer to them as ghost populations because only in the aftermath with this modern genetic technology can even tell that there was some other population here.
We can see the trace of that.
and, you know, for example,
if it's like the Yamaya,
like when they're coming into Europe,
I know there's obviously many different cases
and many different cases look different
in terms of how violent was
or what the clashes look like,
but the fact that, for example, the Yamaya,
if we focus on that one example,
replaces, like,
becomes a dominant group in so many different parts of Europe.
It's not like Jenghis Khan
where it's like one empire
and there's the great Khan
who's like everybody's,
everybody's pledging fieldy to.
They're not organized in that way,
but they're still organized enough
that they can go from place to place
and we are the omnia and we're taking over.
What did that concretely look like?
Yeah.
So that's super interesting.
And I'm going to back up a little bit
because in my book I have a section
where I described when we had these findings
for the first time in the conversations
we had with archaeologists
about these findings. So ancient DNA has been very disruptive to conventional understanding of the
past. And what happened when we had these findings of massive disruption of the local population
in Germany about 45 to 4,700 years ago, based on arrival of people from the steps north of the
Black and Caspian Sea, was some of our archaeologists, co-authors really just were very
distressed by the implication. Because after the Second World War, there had been a
reaction where people said this initial idea that people had based on archaeology, where in the
beginning of the 20th century, when people would see new types of pots in a certain layer of the
excavation, they would argue that this is the arrival of a new people coming through
invasion or through movement into a region.
And it's very disruptive event, the arrival of the cordedware complex or the arrival
of the Belbeaker complex or something like this.
This is a very disruptive event mediated by invasion or so on.
And that was used by, for example, the Nazis to argue that these were spreads of Aryans moving across the landscape and being very disruptive and violent, for example.
And the reaction after the Second World War was to say we don't know this.
And in fact, when you see the arrival of new types of material culture, pots, for example, or tools or ways of organizing life,
you might be seeing is more the spread of culture. You might be seeing, for example, something like people copying use of a cell phone or something like this, which can be used by people of very different backgrounds, and it's just or a new religion spreading. And it's not actually movement of people. And in fact, how could there be a big movement of people? You're looking at densely settled Europe with well-developed agriculture. How could it be that new people coming in from outside will unseat these people, disrupt these people, especially after a period of stasis, after a period of
of especially once
when you have farmers
who are densely settled
and how could these be pastoralists
coming from somewhere else?
They're not as dense on the ground.
In India today,
the British were sort of in control.
The Mughals were in control for hundreds of years
but made hardly any demographic impact.
How could people from outside
with less density make much of a demographic impact?
But then you look at the genetic data
and there's a 50%, 70%, 90% population disruption.
You take the DNA from people after
these events, and almost all their ancestors are from far eastern Europe, right across most of Europe.
And so the DNA proved that that idea was wrong. It was very disruptive. So the question that you
had is, what does it look like on the ground? And so the DNA results was extremely disruptive
to people in archaeology who had made these arguments that change wasn't possible in this very,
that large-scale migration, large-scale disruption probably didn't occur in the past. And so it was
real challenge. It was a real challenge to our understanding of prehistory. It was sort of a case
example, a prime example that's been important for me in showing that we really don't know what the
past was like until we actually look at it and have hard data telling us what it's like. Our
guesses, our models, are, including many of mine, are likely to be wrong because we can see that,
because when we have hard data, we're surprised. I'm sorry for that long preamble. So when what's
happened in the last few years is there's been something of a reconciliation after the book.
Archaeology is trying to reconcile itself with the DNA data, and it's arguing about the subtlety of these interaction events.
So people talk about what's happened in Britain, for example.
Well, maybe the arrival of the Beaker phenomenon, which happens about 4,500 years ago, maybe it's not an invasion.
Maybe it's a kind of peaceful event.
Maybe the previous people, the reason we're seeing such a disruption is the previous people we know they cremated their dead, and the Beaker people buried their dead.
So it looks like a much more abrupt change than it did.
maybe what happens in Iberia
when there's a 40%
arrival of these foreigners from the east
and 60% local people,
but the Y chromosomes are completely replaced
so the local men don't
contribute their DNA to local
later populations. It looks
to you, it looks somehow like that must be
extremely disruptive to the local male population,
but people are saying, well,
maybe this is female mate choice,
maybe this is somehow kind of
not what you think it is, maybe it's not
what happened 4,000 years later,
amongst the descendant of the Iberians and the Americas, where today in Colombia,
95% of the Y chromosomes are European, 95% of the mitochondrial DNAs are Native American.
We know what happened there. It wasn't friendly. It wasn't peaceful. It wasn't nice.
But maybe what happened in Iberia 4,000 years ago amongst these ancestors of people
was much more peaceful, was much more calm.
If you look at detail in Iberia, what you see is the period of this change is actually over 500 years.
But if you look at a microscale, now that we have better data, it's immediate at each place.
So in southern Spain, it's very fast.
And then in central Spain, it's a little later, but very fast.
And so actually, there's these rapid changes occurring in one place or the other.
People thought in Britain maybe this was actually a slow process.
But we now have data not yet published from the Netherlands,
which is clearly the same population of beaker people that's spreading in Britain.
And there it's very disruptive.
And you actually have the whole series of people before and after.
You see that earlier cordedware people are local,
which is actually very unusual for cordedware.
They're actually local people adopting the religion of the cordedware, but mostly local ancestry.
And then the Beaker arrival is incredible disruption.
There's almost no continuity.
Very little continuity.
So probably what's happening with the Beaker individuals is one way or the other, you have some kind of people who expand demographically and displace people somehow, rapidly displaced people over a period of well less than a century.
And do we know whether they were organized?
Because more modern versions of this, when Cortez goes over the new world,
these like serving fealty to the emperor of Spain and so forth,
they're like, I don't know, the Mongols and Jenghis Khan or something.
In this case, I assume there wasn't enough hierarchical organization that something like that was available.
But there was enough organized, I don't know if it was a right word,
but there was enough sort of like persistent invasion that like we're going to keep going
town to town, settlement to settlement, until we've reached the ends of Europe. And so was it just
like the Yamaya were just lots of different independent groups that were doing this at the same time?
Or was it like, how organized was this basically? What I mean to ask? So we don't know. And I think
there's debates even about that. I think one example I've heard archaeologists I work with think
about is the Comanche in the U.S. Southwest where, you know, it's another horse-based,
expanding group, and they expand super dramatically, you know, in parallel to the Spanish expansion
and alongside the U.S. expansion before encountering the U.S., sort of militarized United States at
some point.
And, you know, it's local, there's local bands of people expanding.
They go on campaigns.
They expand to certain areas.
It's the beaker people and the cordidware people, they're contemporary to,
ancient Sumer and a lot of the
Egyptians that we actually
have written history from, it's not so ancient.
They weren't writing, but they
were contemporaries of these people not so much far to their
south. So we really don't know what was going on, but if you were
part of a community where there is a culture where, say, the
males, as we think from reconstructions, from
Indo-European myth, which is probably the class of
cultural shared knowledge these people were operating from, because
we think these people were the spreaders of Indo-European languages in this part of the world.
If you think about this as a world where, at a certain age, males would band together and go on rating parties and so on, and that would then maybe settle down later in life, you can imagine a process where built into the culture, you have a process of expansion, exploitation.
One thing that's really interesting that has actually emerged in the last years and was not really sort of strong at the time that I wrote my book was an understanding.
of the relationship between the Yamnaya and groups like the cordedware and the beakers.
So the Yamna are these groups that thrived between about 5,300 and 4,600 years ago in the steps north
of the Black and Caspian Seas.
They're probably the first people to domesticate the horse, or that's arguable, and they use
the horse in the cart, which was newly invented in the wheel, to exploit the open steplands and be
able to economically expand much more rapidly. They're the first world's first extreme mobile
pastoralists, but they can't get further than the step. So they expand into Europe, they expand
into the little island of the step that's in the Great Hungarian plain in the Carpathian Basin,
and they stop. They can't expand their way of life to the forested parts of Europe, which is most of
Europe. And somehow the ancestry of the Yamaya gets absorbed by the cordedware group, and then later
the Beaker group. And that takes it further through.
Europe. But the cordedware group is quite different from the Yamnia culturally, and in fact, a lot of
archaeologists think that they're so different, they can't be the same. They have some shared
features, but the cordedware have many different traditions. One possibility is that the Yamnaia expand,
and they encountered early cordedware. The cordedware learn some of the adaptations of the Yamnaia,
and then they actually take Yamnaia women, absorb them into cordedware, mostly male communities,
and create a new community, and that group expands. So, what?
One of the mysteries of the Yomni expansion was everybody had this cognitive bias to think this is very male-driven.
People have these Indo-European notions of sort of male-centered mythologies and so on.
So this must be an extremely male-centered migration and very male-centered migration.
You look at the genetic data and you look at the Y chromosomes which track male migration
and the mitochondrial sequences, which are more sensitive to female migration.
And it looks like the step expansion from the east to west is very both sexes, both males and females,
And people have found this confusing, and there's been a lot of incredulity about this.
People expect to see that it's an even movement of males and females.
But it's quite clear that the bias is not so strong.
And we think the most likely explanation for what's happening now is that it actually is a male-biased process, but it's one that's interrupted.
So the Yamaya expansion is very male-biased.
It expands to the edge of the range.
They encounter the cordidware, complex people.
And then what happens is the cordedware complex people interact with the Yamaya people.
And in fact, the Yamaya people actually lose out in that interaction.
And in fact, the cordidware males absorb and take Yamnaya females.
And they actually also take farmer females, because you actually see these sites in early cordiware sites in Czechia, where both things are happening.
females from farmers and females from Yamnai
are being absorbed into the cordedware community
and then they expand further.
So what you actually have is a two-step process
where you have a male Yamnai expansion
and then that ancestry from the step
is carried further through females being absorbed
into the cordedware
and then another male-driven expansion under the cordedware
and so on.
And that brings both female and male Yamnaia lineages west
but not always with the Yamnaya ancestry
being associated with the kind of intuition
that you would think it's domination.
The same sort of parallel thing
in another part of the world is what you see
in remote Oceania in the Southwest Pacific.
So if you look at Vanuatu,
which is the islands,
some of the first islands that people got
about 3,000 years ago in the Southwest Pacific,
so moving to this other part of the world,
if you look at New Guinea and Australia,
people are there almost a little bit
after 50,000 years ago.
People are in the Solomon Islands and the Bismarck Archipelago to the east of New Guinea, maybe 35,000 to 40,000 years ago.
And they stop in the Pacific, as all these fertile places that are good places for people to live, it's completely empty of people until 3,000 years ago.
Suddenly, these people from Taiwan go through the Philippines, they skirt the edge of New Guinea and the Bismarck Archipelago, and they get to Vanuatu and Fiji and Tonga, New Caledonia and Samoa about 3,000 years ago, super rapidly in the guisem.
eyes of something called the Lapida cultural complex.
And if you look at the DNA of the people from this, they're almost entirely East Asian and
ancestry.
They look like early Taiwanese people.
And today, people in Vanuatu and Fiji and Tonga and New Caledonia have only 10% of this DNA.
So something else happened afterward.
The first people are almost entirely East Asian via Taiwan and the Philippines.
And then you look at later DNA from the same part.
And 2,500 years ago, 500 years after the initial arrival, there's mass movement in a male
driven way from New Guinea
in the Bismarck Archipelago into
Vanuatu of Papuans. People
with overwhelmingly
Papuan ancestry from New Guinea coming
into Vanuatu and that's the origin
of the ancestry that's overwhelmingly
there in Vanuatu
New Caledonia today. So there's a two-step process.
The initial step, which is
East Asian ancestry and these people who
invented outrigger canoe technology
and long-distance sailing.
And then the technology becomes adopted
by Papwins
who are using this culture for the next few hundred years.
We can see them trading back and forth
between the Bismarck Archipelago in Vanuatu.
And by the end, this culture is carried out
by Papuan ancestry, and males from this group
then spread into Caledonia and take local females.
But the ancestry is flipped from the way
that people have this cognitive bias that should be.
So people think, oh, it should be the East Asian,
males, kind of somehow dominating the local females
or something.
You see the reverse.
and this is what's going on.
And it's not like, it's very complicated and subtle.
So when you actually see evidence of males and females behaving differently,
it proves that there's socially asymmetric behavior of two groups as they interact with.
What it means is confusing.
It could be female choice.
It could be violence.
It could be genocide.
It could be different patterns of male and female dispersal with groups who travel
being of one sex or the other.
And we can look for clues in the genetic data,
and certainly in concert with the archaeology,
we can maybe figure out more.
That's really interesting.
I guess speaking of this,
going to a totally different era,
but something I'm curious about.
So going back to archaic humans,
and we talked a lot about Neanderthals,
but obviously there were two different species of Denisovans,
or I don't know the species is the right word,
but two different kinds of Denisovans.
And also, I think the hobbits in Asia,
right? And then I don't know if there's more, but like we were talking about half a dozen different, like distinct groups and only one survives. Do we, I understand if like a new cultural technology is developed by this near east early tribe that like then they expand out through Eurasia. And I get like that might enable them to be so dominant. What I don't understand is how is it that none of the other one survived?
not even one tribe of Denisovans or like one group of Neanderthals and one group of hobbits.
Like there's no there was no niche in which they could just like fend off everywhere,
this one tribe of humans, one tribe of African humans just dominated.
I don't know if I asked a question.
Yeah.
Like how did none of them survive?
Yeah.
I don't know.
I mean, I think it may be a numerical issue.
I mean, if you look at the part of the world where we have the best data in the
holocene in the last 10,000 years, there are play.
of long-term survival of hunter-gatherers for a few thousand more years than elsewhere.
In the Netherlands, for example, hunter-gathers survive for several thousand more years than in the
surrounding areas, probably because they're exploiting the wetlands.
But they're gone soon enough once something happens.
Mammoths go extinct mostly 14,000 years ago, but they survive on Wrangel Island north
at Sarberia until 4,000 years ago.
So at some point, each of these places is encountered by the spread of modern humans at high
densities. The other thing is, it's not even clear to me what expansion means. So, you know,
if you want to make a strong argument, you might argue that non-Africans today are Neanderthals
who just have waves and waves of modern humans from Africa mixing with them. Like, who are the
ancestors? So that might sound like a silly kind of philosophical statement, but like genealogically,
I don't know if this happened before or after my books. You probably don't know about this,
but there was a super interesting series of papers that came out, which made it clear many things.
things became clear. But one of them was that actually the proportion of non-Africans ancestors
who are Neanderthals is not 2%, which is the proportion of their DNA in our genomes today,
if you're a non-African person, it's more like 10 or 20% of your ancestors are Neanderthals.
And what actually happened was when Neanderthals and modern humans met and mixed,
the Neanderthal DNA was not as biologically fit. And the reason was that Neanderthals had lived
in small populations for about half a million years.
years since separating from modern humans, which had lived in larger populations, and it accumulated
a large number, thousands of slightly bad mutations, such that in the mixed populations,
there was selection to remove the Neanderthal ancestry, and that would have happened very,
very rapidly after the mixture process, and there's now overwhelming evidence that that must
have happened.
And so if you actually look at the ancestors, if you count of your ancestors, if you're of
non-African descent, how many of them were Neanderthals, say, 70,000, you're in a
years ago, it's not going to be 2%, it's going to be 10 or 20%, which is a lot.
And maybe the right way to think about this is that you have a population in the Near East,
for example, that is just encountering waves and waves of modern humans mixing.
There's so many of them that over time it stays Neanderthal, stays local, but it just becomes
over time more and more modern human, and eventually it gets taken over from the inside by modern
human ancestry.
This is what happens to northern European hunter-gatherers.
they become farmer over time, but they're intact on the male line, and culturally they stay on the
male line intact. And so I'm not trying to be politically correct. I'm just saying that you can
actually have scenarios where this happens. So for example, in elephants, if you look in forest
elephants, which are the smaller of the two species of elephants in Africa, some of that,
they're very matrilocal. They pass, they have these female lines that are very intact over a long
period of time. And if you look at these, sorry, Savannah elephants, which are the bigger elephants
in eastern and southern Africa, they have savanna elephant DNA overall, but their mitochondrial sequences
are forest elephant, which are the smaller West African elephants. And the interpretation of this is
that you just have waves of waves of dominant male bulls from the savanna coming into populations
and eventually just replacing all of the genome in waves and waves of an intact forest population.
And so all that's left is the mitochondrial sequence, which is passed on the maternal line.
It's not even obvious that non-Africans today are modern humans.
Maybe they're Neanderthals who became modernized by waves and waves of admixture.
One question you could have, because we were talking earlier about how small the initial population that populated all of Eurasia was, that was like, well, a couple thousand people.
And one question you can have is like, if, and we were also talking about how random and contingent this whole history of humanity has been.
And one question you could have is like, was there some chance of a couple of variables were different that modern, like quote unquote civilization, uh, basically greater population density, greater development technology, so forth, would not have happened except for some really, really like lucky chances or was it the case that even if that one tribe didn't do it, some other tribe of humans would have done it. And if even if some other tribe of humans from Africa hadn't done it, then like Neanderthals had enough cognitive sophistication that they would have done it. I know this is.
is a very sort of like speculative question, but just like how, yeah, how random does primate to
civilization field? Does it feel like we had to go down the exact right path? Or was it like,
this is kind of the trend across many different branches of the family that leads to humans?
I don't know. I mean, it is very speculative. But like, I'm very tempted to think that there's so
many of these groups that some of them would eventually have gone down this route. And one example
of this that's interesting to think about is the parallel development of agriculture and the
holocene in different parts of the world. So you have in the America is what's almost certainly a
completely independent development of agriculture 9,000, 8,000 years ago. From that in Eurasia,
you can argue whether the East Asian and Near Eastern developments are different, they probably
are, but maybe you could argue they knew about each other somehow, or the Papwin one. Maybe you could
argue they somehow knew about what was going on in other parts of the world, but probably didn't.
But certainly the America's one was isolated.
And suddenly, for the first time, you have these independent evolutions of full-blown agriculture
at the same time in many places in the world after the Ice Age.
This makes you think that it's somehow deterministic, that somehow some kind of set-up of
characteristics at this time causes this to happen.
And why doesn't it happen at the previous period of stable climate, you know, before the last Ice Age?
Some people say, well, maybe it was actually not as good as the last 10,000 years.
But I find that confusing as a statement.
It seems that somehow some set of characteristics,
it's tempting to think that some sort of cultural or biological,
but more likely cultural characteristics are in place and seeded already.
At the time of the last Ice Age, such as when the reemergence happens,
this happens in multiple places simultaneously.
Because it happens so fast, right?
It's not like you had to wait for tens of thousands of years after the Ice Age.
It's like literally 2,000 years after the Ice Age.
It's very old in the Americas.
Yeah.
Okay, so then the Ice Age, is it 100,000?
Or how old is it?
Because, like, before that, like, humans split off 200,000,
or at least some branches of the human tree split off 200,000 years ago.
And Neanderthal spilled off even before that,
but that's like before the last Ice Age started, right?
So to the extent that your earlier statement about,
like, a lot of cognitive sophistication was already evident 200,000 years ago
or 300,000 years ago,
doesn't that imply that before the Ice Age Age?
stage we should have seen agriculture. Yeah, it's tempting to think that. So I'm very confused about
this personally. People say that the last 10,000 years are very unique on a scale of millions of
years. If that's true, maybe we're in a very special time. That is somehow a period of warmth and
stability of climate that's unprecedented for two million years. Maybe that's true. But the other way
people often say it is that we're in these cyclical periods of a few tens of thousands of years
in the Holocene, the last 12,000 years or so,
is a period of warm, warming,
and then there's a period of a couple of tens of thousands of years,
which is the last Ice Age.
And then there's prefer that.
There's a few tens of thousands of years of warming,
and that's when we sample the Neanderthals,
the late Neanderthals from.
And then before that, there's another stage of cooling.
And then before that, another stage of warming.
So this is marine iceis tape-top stage 1, 3, 5, 7, 9 are the warm periods.
we're in one now, and marine stage 2, 4, 6, 8, and so on are the ice ages.
So the last glacial maximum was marine isotope stage 2.
If there were, quote unquote, lost civilizations, maybe not, obviously, not as sophisticated
as anywhere close to the last thousands of years, but maybe early Sumer or something like
that or like Comanche slash Yamaya level or something.
But that happened before the Ice Age or maybe in a part of the world.
all during the ice age where climactic conditions were better, would we be able to tell
based on modern techniques?
I think we would.
Okay.
And there's just not any evidence of them?
I think nobody has found, I mean, there's very sophisticated human burials in Europe and Africa
and East Asia and different parts of South Asia and Eurasia and so on, Australia in the last, you know,
in the marine isotope stage three in the last period of warming.
and, you know, burials full of beads, burials full of symbolic behavior.
Maybe you interpret this as civilization.
But extensive settled societies you don't see.
I think we touched on this when we're talking about population size.
But, like, one thing I'm sort of confused about when we talk about the lineage is like, in one sense, a lineage is very distributed because obviously many different archaic humans contributed to the human genes.
line. In another sense, it's also like maybe the main one is a couple thousand people. So like,
I don't know there's a question there, but like, I'm not even sure how to think about the,
can they just like hang out in like the size of Montana? Like the entire human lineage is,
I think that the sort of lesson from ancient DNA and the genome revolution has been that
anyone in the world is the result of recurrent mixture again and again in the past. So,
you might think that the last 500 years are unusual periods of history with the people of African and
European and Native American ancestry coming together in the Americas, and that this is unusual because
of transatlantic travel, but almost every group in the world is the result of many mixture
events as profound as these on many timescathes. So South Asians are the result of mixture between
groups very different from each other as different as Europeans and East Asians, four to three
to two thousand years ago coming together and then crystallizing into a relative lack of mixture.
since that time. Europeans are the result of mixture of Yamaya and farmers and hunter-gatherers.
People in different Near Eastern groups are the mixture of early Iranians and early Levantine people
and Anatolians who are super different from each other. There's huge differences amongst East Asians,
huge differences amongst Papuans and East Asians, profound differences amongst different Native American
groups that come together to form groups that we have data from later, an example after example
we look for. So if you think about any one lineage today, any one group of people,
and you want to trace people's ancestors back in time and think,
where do our ancestors scatter in geography at different time points?
Almost everybody's ancestors are scattered into different geographic distributions
that are not all in the same place.
So the evidence that our lineage was mostly in Africa is based on an idea,
I think, an assumption, a kind of inertial idea that our lineage has must have always been in Africa,
because Africa is the central of human history.
But if you look at the archaeological evidence, it's not incredibly clear.
And if you look at the genetic evidence, we have many early branches from Eurasia and only one from Africa
and complexity and branching in Eurasia that's sampled in the DNA record, DNA from Deneasovins, DNA from
unknown archaic lineages that contributed to Denisovins, Neanderthals, and all of those are represented in the Eurasian record, not in the African record.
Part of that is the fact that ancient DNA is preserved in Eurasia.
but maybe actually there's a period when our lineage resides in Eurasia.
It's not obviously wrong.
So I think that hypothesis is out there as a possibility.
One thing I would love to see.
I don't know if, I assume this will change over time as more difficult comes up,
but some sort of like chart that is superimposed upon a world map and it evolves over time.
And then maybe you can like you can just have sort of blobs representing different population groups.
You can start up with the archa humans and go back.
like 200,000 years ago. Go back even before that. Because if this is a global event, it's not
just an African event. So for hundreds of thousands of years, you can just see different
populations splitting off, merging back together. And if somebody can make that sort of animation,
I think that would be a very useful. I think you can. People have tried to make animations
like this in some way. But one way to think about it, you know, I think there's a huge danger
in being too interested in yourself. This comes across in my book, I think. But it's very,
very tempting to be interested in your own history and think it's important.
It's obviously not important compared to other people's history.
However, if you think about one person's history and you think about where their ancestors
live two generations, four generations, eight generations back in the past, those are your great-grandparents.
And great-great-grandparents, you may even know where they live.
But then you can actually plot on a map a different number of generations back in the past
where your ancestors lived.
And it's an interesting to do within your family, because maybe you're from, you know, I'm from
my ancestors going back a few generations or in Europe somewhere.
in different parts of Europe, for example.
So people do this, and when you get a test back
from one of these personal ancestry testing companies
like 23 and me, they'll say,
oh, you are 20% Irish and 30% Chinese or whatever it is,
and so on and so forth.
And what they're referring to is roll back 20 or 30 generations,
where are your ancestors scattered in proportions?
But then if you roll back 3,000 generations,
there's some in East Africa and some Neanderthals, right?
So what you can actually do is for any one,
group of people or any one person, there's different time slices that matter. Thirty generations ago,
you get the 23 and me output. Three thousand generations ago, you get the proportion of your ancestors
who are Neanderthals or not Neanderthals or Denisovins or something like that. If you're from
one of the many populations around the world that live in De Nisavans. If you are any population,
going back further in time, presumably there's something similar happening, where mostly in Africa,
but possibly outside of Africa 300,000 years ago, people's ancestors will be coming from different places.
It's very plausible that people's ancestors are not all in Ethiopia at 200,000 years ago,
that in fact some of them are in North Africa, some of them are maybe in West Africa,
some of them are in South Africa, some of them are in Eurasia.
And that actually appreciable fractions are in each place,
and that braid and that trellis is coming together again and again over time.
As you move further back, they'll collapse, some will go extinct,
some will reappear, some will remerge.
And at any one point, there's never a singularity.
I don't know if you're familiar with Nat Friedman's Vesuvius challenge.
I don't know if you saw that when it was going around.
So the scrolls in the library at Herculaneum, there's a volcano.
I forgot, it was like, was it basically during the Roman Empire?
79 AD.
Okay.
Well, and it buried the scrolls in that library.
They all became literal ash, or at least very burnt.
And so Nat Friedman found this.
professor who had done CT scans of these scrolls, but there was like really no way to decipher
them. We just had the CT scans. But it felt like this is the kind of thing where somebody out
there might be able to figure out a technique for how to do it. We know what the end results should
look like. We just don't know what the intermediate steps look like, but it feels plausible with
modern technology. And so you offered a million dollar prize and a 22-year-old or 21-year-old
with, you know, a GPU and it coded up a, you know, I think a C-N.
an end model to decipher these squirrels.
And anyways, is there something in your field which has this sort of feeling where the,
there's something we need to figure out.
We don't know the exact right technique, but if you could put it out and just offer a million
dollar bounty for it, maybe somebody will come up with a cool new technique to figure it out.
Yeah, I don't even, there's like many things in this area, but I'll give you, I'll give you
the simple one and then I'll give you, I probably should give you a single answer.
But I think that the basic answer is what we need is DNA from Africa.
So we need DNA, old DNA from 50,000 years ago, 100,000 years ago, 200,000 years ago from all over Africa.
Because it's super clear that our lineage is complicated within Africa.
There's archaic forms in the archaeological record.
And modern human data is extremely substructured with evidence of having come together for many different lineages, which must have been different archaic forms in Africa.
and contributing to people living today.
So having that would crack our understanding of how modern human lineages
braided together and relate to the other archaic lineages we have data from.
So that's obviously extremely valuable.
And what does it need to get those samples?
I think we need to, A, identify those skeletal remains or the sediments in old caves that are well-preserved,
or rock shelters that contain enough DNA to extract.
And I think we need extraction techniques that will,
allow us to get at that material. Maybe we even already have them, and we just need to wait until
that begins to happen. But it would be revolutionary, because the experience in Eurasia has been
when we get DNA from old sites or new sites for which there's been nothing, we find
Denisovans. We find people like we completely didn't expect to see before that break our
understanding of the past. I think the other area where I am super excited, and I think it would be
a thing to
reward and to
incentivize would be to
try to crack this body
of information, to try to understand
how biological
adaptation happened in the
last hundreds of thousands of years.
We simply don't know the answer
to your question from a genetic point of view
about how modern
human cognitive
and other types of
propensities
how they develop, the biological underpinning of the differences that modern humans have from
our closest living and relatives. We just don't know how they evolved. It's not even clear how
biological they were. But being able to interpret the genome in terms of how these changes
occurred is we just don't know how. I was at a talk a few years ago that was really shocking
to me, which was based on, there was a researcher at Caltech, and she was talking about being
able to directly read the brains of macaque monkeys. A monkey would be shown 2,000 photographs,
and her student would be recording from different neurons in its visual cortex and learning
the neurons' response to different images. And so what they would do is they would decompose
the images of faces, human faces, into eigenvectors with the principal component analysis.
And then the neurons, specific neurons, were responding to particular eigenvectors. And they learned
the language of how the photographs and the decomposition of them computationally mapped on to the neurons,
and they actually learned a language for how that's the case.
And then what they did is they showed a 2001 photograph to the monkey.
They recorded from its neurons and then tried to use the neurons to reassemble a photograph.
And it was a perfect reassembly of the photograph.
They had actually completely learned how the brain, this KAC's brain, represents the photograph going through the brain representation.
So in that case, they were able to completely figure out the language of appreciation of a photograph through the biological representation of it.
And if you look at the parallel problem of the genome, how does the genome code for development and how we are, get to how we are today, how do we have our capacities and so on?
to me it sounds like at first principles, if you ask me what's a simpler problem, figuring out how to represent the natural world in our brain or figuring out how to code for development.
I think my cognitive bias, if you were presented ab initio, this problem would be to say it's easier to code for development than to represent the outside world in a brain.
But this group and other groups are figuring out how to do this nearly perfectly with a readout from the brain.
And we really can't read a genome and tell you how a person looks, how a person develops.
we can begin to say what terrible diseases they have, but not even predict that so well.
And so that's very depressing that we can't actually read the genome enough to actually see how
that occurs, and we actually don't even know how evolution happens. Like, for example, does evolution
happen by lots of little changes pushing in some direction? Like, for example, if we want to move
toward a different positive set point for height or for some cognitive capacity or propensity or something,
is this by infinitesimal change of polygenicity, many genetic variants pushing in the same direction?
That's the mathematician's bias.
Or is it like the example I told you about before with David Gokman and Leran Carmel with the voice box
where everything pushes in the same direction and goes up to 100% and shifts all in the same direction
in an incredibly simple and simplistic way?
If you talk to neuroscientists and molecular biologists, their brain tends toward the latter,
and this few examples suggest that maybe that's occurred.
And so maybe this kind of polyogenic paradigm of adaptation when adaptation really matters,
is that really what happens when important adaptation matters, happens?
Or is it instead something simple and simplistic and reliant on a small number of genes?
So what I would really like to know is can we mine the genetic data we have from modern genomes
and archaic genomes?
We now have neanderthals and denisivans.
We now have some early modern humans who are far enough back in time that appreciable change may have occurred.
And can we actually learn the patterns of biological adaptation well enough to actually read the code of how we change and how we adapt to new pressures?
And I think that that's something that's not impossible to imagine.
We can learn how to do.
But it takes a different way of thinking.
One thing that would also be interesting there is one big debate in trying to forecast AI is how big is the information content that describes the human brain?
because with AI models we know, obviously we can tell very easily, like, here's how difficult
it is to, here's how many bits it takes to encode the parameters, but if we want to go back
to like, how many bits is it to encode the training paradigm itself? There's obviously the training
code, then there's a hyperparameters, and here's how many kilobytes that is. And the question
is, we know that the human genome is three gigabytes, but the, if you could, and then, but we know
only a small fraction is protein coding, and then also how do you, like, how do you count the,
the percentage that is responsible for regulation and so forth.
But if you could only get the part that is responsible for the brain, how big would that be?
Because can we compare how big that is with respect to how big the trading code for a model is?
And then it would give interesting insights into how similar those two processes are.
So what we're beginning to be able to do, I mean, I don't know how important the particular
class of work I'm involved in right now, but we're engaging with this in some way right now
because we have incredible data from Europe in the last 10,000 years with huge numbers of samples
where we can watch very small changes in frequency over 10,000 years.
So in this period of time, which is not a particularly important time in human evolution,
it's well after the important stuff happened.
It's the last 10,000 years.
But it's an eventful time.
The environments became very different.
The lifestyles became very different.
And so this is a period of time where we've done an experiment of nature.
A push has happened against the human genome.
There's agriculture, there's people living more densely, there's infectious disease happening in a different way, in a different type than before.
And how does the genome respond to this traumatic set of conditions?
And so you can actually watch all these little variables, all these little gene frequencies, tens of millions of them shifting up and down in coordination.
And what can you learn from that?
Because we now have all the measurements, right?
We have a selection coefficient measured at 10 million positions across the genome.
How do you...
And we know what the effect of those are on our own traits today.
because they've been measured in large numbers on the order of a million people today.
So what can you do with this data set?
How relevant is this to important evolution?
So I think that that's the type of rich data that could potentially be mined
to learn something sort of qualitatively interesting.
Beyond the storytelling that's characterized molecular biology,
beyond the FOXP2, where you say,
oh, maybe it's this, maybe this is the Holy Grail,
or maybe that, maybe that's the Holy Grail.
Maybe you learn something about the process
that's deep and profound.
And so I think that $9 million goes to someone
who can actually come up with a way of thinking about the process
that's really kind of qualitatively profound.
Interesting.
All right, well, I guess we need to find the million dollars first.
But somebody, if you got a million dollars
and somebody else, if we got the idea,
we can make a market here.
One of the interesting things,
we were talking about the contingency of human history
and human evolution.
And one of the really interesting things
is not only as a contingent,
but it seems to be persistent,
at least across the last few thousand years
and the way that genetics have changed,
culture has changed.
So when the Indo-Europeans, the Yamaya,
disrupt, you know, whatever,
the Indus Valley civilization 4,000 years ago
or something like that,
the not only does that mean that the languages,
which are spoken in India today,
or at least many of them,
are descended from this group,
but literally the actual, like, core myths of Hinduism,
are descended from this initial group.
How is it possible that for 4,000 years,
the things like caste, things like basic mythology,
can be preserved with such high fidelity,
especially in an era for half of that,
you don't have writing, not half of that.
For at least a couple thousand or two thousand years,
you don't even have writing.
How is that sort of persistent cultural heritability preserved?
Well, you're asking me a cultural question,
not a genetic one.
So what you see in the genetic data from South Asia is an amazing process.
So today, in South Asia, almost everybody is on a gradient of ancestry with two poles,
what we call the ancestral North Indians and the ancestral South Indians, with very few exceptions.
The exceptions are people with your last name, Patel.
Oh, yeah?
And as a minor exception, but it's interesting that that's your last name.
But also people from Munda, like speak Austro-A-A-Sha-A.
languages or are amixed with them or people who are Tibetan-Burman speakers, but most people
are on a mixture between two poles, ancestral North Indians and ancestral South Indians.
And when you look at genetic data from India, it looks like what you see today in African-Americans
with people with relatively higher or lower proportions of, say, European and West African-Ancestry.
And so it looks like a population in the process of mixture, like African-Americans who are
the result of mixture in the last 10 or so generations between two.
mostly two very different populations, mixing in different proportions. But what happened in India is it froze.
So the mixing started and then it froze. And the freezing happened two to three thousand years ago,
and it froze because of cultural change. So what happens in India is you have a three-part change.
You have an arrival of three-source populations, essentially parallel to what you see in Europe.
There's a local hunter-gatherer population. There's what's probably a farming population,
maybe also hunter-gatherer population initially.
And then there are these people descended at some level from step pastoralists.
These are the three primary ancestral populations.
They come together at the end of the decline of the Harapan civilization,
which ends about 3,800 years ago.
And groups from this Harappan group, which we actually have sampled,
and they're all on a different gradient,
they mix with the step groups and with the local hunter-gatherer groups
to form and coalesce to these two later groups,
which we call the ancestral North Indians
and ancestral South Indians.
And then mixtures of these two mixed populations
form in the gangetic plane,
form people all along this gradient,
and it's really a very simple mixture of two sources,
and then the cultural change happens,
which locks in the caste system,
and people freeze, and they stop mixing very much.
And so what you see is instead of people collapsing to a point,
which is what you see in Europe
after this type of mixing process of these three sources happen
in any one region,
you see this gradient forming, and it's stable.
And because of the enduringness of the caste system,
you actually have a snapshot going back a couple of thousand years
and without this continuing change.
And so it's kind of an amazing system genetically to look at
because of people's reluctance to mix with people
from very different groups in traditional communities.
And so the three steps are coming together
of very different populations,
and then convulsive profound mixing of groups that had previously not mixed,
and then locking into this static system as the caste system sets in,
which is documented in the early text like the Rig Veda.
And you can actually see the change in that discussion during the course of the Rig Veda.
I know you warned about being too interested in yourself,
but what was it about the Patels?
Where are they an exception?
So the first good genomic data from South Asians is embarrassingly from Houston, Texas.
So in the Human haplotype map project, there was a sample from Houston, Texas of Gujarati's in Houston.
Yeah, a lot of Attles in Texas.
G-I-H.
And if you look at them, people are actually not on this gradient, but they're in a few different places.
They're clustered into groups, and there's the main gradient, and there's an off-gradient group.
And I forgot how we figured this out, but someone figured out that these people are all Patel's.
And Patel's of their own distinctive history with different relationships to people in Central Asia,
and it's probably some additional ancestry from Central Asia,
pushing them off the main gradient.
Interesting.
We've obviously talked about so many different types of fields.
I'm not sure where exactly, in what field you started your research,
but obviously now your lab is doing stuff in, like, genetics,
and you have to touch on how does your research combine with archaeological record,
what are the inferences you can make from that?
Or obviously, different kinds of history.
There's so many different disciplines here.
And how does one sort of like, you start your field at a certain, researching a certain topic,
do you just keep expanding?
Now I'm going to master archaeology.
Now I'm going to master anthropology.
Now I'm going to, like, how does that process work through your career?
It's very unstable life.
So I think that in some areas, like in archaeology, a lot of my colleagues who I respect tremendously,
the career trajectory is you learn to become an archaeologist, you dig, and you have a set of
digs that you're doing for dozens and dozens of years with similar or slowly evolving techniques.
And my work has just changed so radically. When I started doing this work, one could not sequence
a whole genome. The genome was not yet sequenced. We had very little genetic variation accessible.
The amount of data has increased by orders and orders of magnitude every few years. The types of data
that we collect, the ability to collect ancient DNA beginning 14 years ago, the ability to
generate the volumes of it we have. We had no DNA, ancient DNA in 2009. And then in 2014, we only
had a few hundred individuals with genome scale data. We have tens of thousands of individuals
with genome scale data. We had data from places we didn't have data before. So it's such a destabilizing
process. And so someone like me wanders into areas that I'm not expert.
I'm not South Asia, and I get to be part of trying to learn about the new history,
about history of South Asia.
I get to interact with archaeologists at the cutting edge of learning about, you know,
ancient Southwest Pacific or ancient China or ancient Southern Europe.
It's like an incredible privilege, but also I'm a kind of rank amateur in terms of a lot of the work I do.
So one wanders from one area, one's an amateur in to another area what's an amateur in and tries to learn a lot.
maybe this is a little bit like what it's like in Silicon Valley right now,
with constantly doing new things and bringing some skills to bear that are useful
and hopefully trying to be respectful and of the people one works with and the knowledge,
the tremendous knowledge people have and to learn as much as one can and to work with other people
to try to produce some joint research product that makes progress.
How do people so like, I don't know, somebody's doing,
archology for their entire career on a certain group in some mountain somewhere and then you come in
and you're like, you know, here's a paper. We figured out what the exact right exact genetic
combination that explains all your research is. Is it like, is there a reaction usually?
I don't know how much of this you can say, but like basically are people sometimes disappointed
Ned, that you've been able to figure out the things in their field with a different technique?
I think that a lot of people we work with are incredibly excited about being able to do this.
Prehistory is a period of time we know so little about.
We have such poor clues.
True archaeologists who are truly dedicated to understanding the past are super thirsty for knowledge about the time periods.
And if a new scientific technique becomes available that can probe these times, the true archaeologists who are truly interested in the past get incredibly excited.
And they embrace it as they've embraced previous scientific techniques such as scientific archaeology, such as isotopic analysis, such as radiocarbon dating.
And that's been my experience with people again and again in archaeology, with people who really want to know about the time periods before writing when, at some point, one didn't even imagine one could learn anything, being excited about this new type of information.
I think sometimes people are dug in to particular views of the past that are challenged by the new findings that come from scientific,
research such as ancient DNA. And when the DNA is strictly in opposition to some of these
models, that becomes an area of tension. And I think I have found myself to be proven wrong
in a number of cases, including by my own work or by other work amongst my colleagues. And
like, I hope to be someone who can welcome that. One of my idols in this field is the archaeologist
Colin Renfrew, who is a British archaeologist who is responsible for the Anatolian theory of Indo-European origins,
the idea that farmers spread Indo-European languages, the language spoken in Armenia and in Iran and in northern India and in moach of Europe today,
spread with farming after 8,500 years ago from Anatolia in all different directions,
and that the demographic expansion and economic transformation associated with that spread farming.
It's very plausible, and there was a debate with Maria Gimbutas and others who argued that these languages spread from the step north of the Black and Caspian species.
And one of the main arguments for the Anatolian hypothesis was that step expansions could not have been demographically significant
because they were much thinner on the ground than farming expansions, and that this is why the step could not explain it,
even though other linguistic arguments made the steps seem more plausible.
And so when the genetic revolution happened with regarding to our understanding of Yamnai expansions and into European origins in 2015, Colin Renfrew at some point said, I was wrong. I was wrong about this topic. In fact, it's the weight of evidence now suggests that in fact demographic transformation did come from the step. It's kind of amazing it's did. Maybe it's from disease. Maybe it's from something else. Who knows what it is? That's a very interesting topic. But we adapt. We learn. So I think that this is incredibly inspiring to be able to change one's opinion.
Um, final question. So you mentioned these different revolutions in our ability to understand the past. Uh, the, you, like, radiocarbon dating to not, obviously now with ancient DNA and genomic sequencing. Um, is there something that feels like the next thing along the spectrum? Because one would hope in the very future, like a thousand years from now, the future AIs are looking back on human history. And, um, hopefully there's like no loss period. Hopefully like literally, they, they know what kind of gods.
the tribe in the Near East that basically settled Eurasia worship.
They would know everything, right?
And then along that spectrum, we're making progress.
But what is the next thing after advances in more genomic sequencing or more samples
from different parts of the world?
I think I don't know.
So the discovery of the ability to extract DNA from ancient human remains was such a shock
that we could even do this.
We just didn't think we could do this. There's a section in the introduction of my book,
which was sort of my impression of what it was like. I had a conversation with my PhD supervisor
about what it would be like if one somehow could open a cave or a room that was echoing still
with languages that don't exist anymore that are not yet spoken. And you could hear the words still
echoing somehow after thousands and thousands of years and record that down. That's what ancient
DNA is like, it's an unexpected gift from the past that this, what we thought was an incredibly
delicate biological molecule, in fact, is intact. And there must be other such things.
Just it's hard to imagine what they are. In ancient DNA, there is an extraordinary amount still
to do. So there is systematic sampling from many, many places in the world where there has not yet
been sampling. There is systematic sampling and the ability to sample from deep, deep into the
past, up to the point where we can begin to decouple these lineages from each other. I think that
will reveal incredible richness. And I think that that's something that we should all look
forward to, the insights that come from that, both in terms of the understanding of individual
places, including places like many parts of Africa and South Asia and Australia and New Guinea and so on,
where we have essentially no data currently in terms of ancient DNA.
but also in terms of deep, deep, deep time and the deep lineages that mix together to form us,
where we really have no sampling except for the Denisovins and Neanderthals right now.
I think that's a great place to close.
David, thank you so much for coming out of the podcast.
I highly, highly recommend your book, Who We Are and How We Got Here.
I mean, yeah, just so wild.
Just basically a lot of the stuff you learn in grade school at least needs a lot more clarification.
Some of it is wrong in the fact that that's the case.
It's crazy.
And I hope that, I don't know, in five years, 10 years, there's a new edition of the book or a new future book you write that all the questions that we talked about today, which we don't have the answers to.
It seems like there's a bunch of progress happening here and I'm very eager to see what the future results look like.
Great. Yeah.
