Tomorrow, Today - Superbugs, Climate Change, & Capitalism with Dr. Ayesha Khan

Episode Date: April 11, 2022

We chat with infectious disease specialist Dr. Ayesha Khan about superbugs, drug resistance, climate change, and how all of these things are exacerbated by one common denominator-- our economic model ...of growth. How does climate change reinforce the speed at which drug resistance is spreading, and what solutions are out there around solving the riddle of protecting people from these dangerous bacteria and fungi? Tune in to find out. To hear more from Dr. Khan, take a listen to her podcast Disorderland wherever you get your podcasts, check out her newsletter at wokescientist.substack.com, or follow her on social media @WokeScientist!

Transcript
Discussion (0)
Starting point is 00:00:14 Hey, folks, welcome back to tomorrow today. This is your host, Andy, and I'm here with my co-host. Me. It's Nash, guys. It's me. It's Nash. It is. So today we're talking about some really exciting and uplifting things.
Starting point is 00:00:28 You ready for it? I'm ready for it. Super bugs. Oh, wait. In global catastrophe. Oh, okay. Like not just really big bugs or something. Yeah, no, I was thinking like superhero bugs and then you ruined it, like right away.
Starting point is 00:00:42 Like Tickman? No. No, was Tickman a thing? Yeah. It was like a really weird thing. We're not going to talk about Tickman. We can't get distracted. That's another one.
Starting point is 00:00:51 Another day. That's not a super bug. Okay, I understand now. All right, so super bugs. The ones we're talking about are like antibiotic resistant stuff. So the shit that you're afraid of if you go to the hospital and catch. Like a serious staff infection. Yeah, like the stuff that they're like, hey, we tried these drugs.
Starting point is 00:01:07 They're supposed to work, but they did. And so. Got it. That kind of stuff. So this is one of those things. I think I remember being a kid back in the 90s and you'd see on like a dateline 60 minutes or something and be like, you know, is this the, you know, the thing that's going to end humanity? Like up next, we talk with researchers on blah, blah, blah, and there's always this thing that was impending. Like global warming. Like global warming, which means obviously it's never going to happen. Right. We're safe.
Starting point is 00:01:36 Yeah. So global warming hasn't happened. They've been talking about it for 40 years. So clearly it's never going to happen. I mean, it's still snows, Andy. It still snows. I mean, the trees are all budding out, and it's April here, early April. Yeah, that's a normal thing. So what I want to do is just kind of outline a little bit about what this conversation kind of involves. Sure. Because I think there's a lot to it that we don't really understand.
Starting point is 00:02:02 So like I said, this is something I think most people have heard of, but it doesn't really mean anything. It's like, that's a thing that exists. and I know I should be worried about it, but it kind of is like out in space and like the news and not like in my hospital that I go to or whatever. So for context, the CDC reports that in the U.S., someone actually dies from a super bug every 15 minutes. And there's more than 2.8 million antibiotic resistant infections occurring in the U.S. each year, which causes over 35,000 deaths a year. So yeah, it's like not as insignificant, I think, as we think, because it's. not in the news. Like it's it's killing people. It's killing a lot of people. Jesus, yeah. The challenge is that we've had this idea that we could do whatever because the
Starting point is 00:02:51 future is going to like we've basically treated the medical field like the stock market in the sense of like, oh, we've always had 10, 12% growth. So we always will. We'll say that there's no guarantee that we're going to continue. But everyone just kind of assumes like you don't go to your retirement person and they'll be like, yeah, you're not going to get, you're only going to get 2% growth because there's only so much growth left. The years of that fast growing period are gone. Even if you know that the past isn't the future, we just kind of treat it that way anyway. So basically what happened was that during World War II, as researchers started realizing how to utilize penicillin to cure like battlefield infections, what we saw after the war was like this
Starting point is 00:03:39 massive explosion in industrial production. And it was, you know, the American way. Like, if it's worth using, it's worth overusing. So they just used it for everything. And there wasn't any, like, really well-understood regulations around making sure that it's used appropriately and, like, actually kills everything off. Alexander Fleming, the guy who actually was awarded a Nobel Prize in 1945 for some of his work with penicillin, actually stated at that time, like,
Starting point is 00:04:09 Like, there's a failure coming for this. We need to be prepared. And basically what he said was that if we use non-lethal amounts of penicillin, it's going to make shit that is resistant if you don't kill it all off. And it really only took, like, as much as it's like, oh, this is in the 1940s, it took only a couple of years to start already seeing penicillin resistant strains of various stuff. All good things. Just, you know, it's how you want.
Starting point is 00:04:39 on it really. I mean, you want the bad news right on the tail end of the good news, I think. Yeah, it keeps you nice and level, even keeled. Tamper's the hope. Yeah. So in classic market fashion, very quickly there were responses to this. And it was like, okay, we have all these pharmaceutical companies that started just pumping out alternatives to penicillin. And at first it was like, cool, like this is great. Then they had all these issues, which we're not going to talk about, of like, basically why the FDA had to start getting involved because they're making things that technically worked, but also cause, like, other really bad stuff.
Starting point is 00:05:16 Well, the free market provides. And it provided a lot of debilitating health issues. Perfect. Yeah. Basically, what happened is then the FDA started getting involved. They started, as these low-hanging fruit that got produced very early on, either became no longer usable because of the fact that it was causing major health issues or because now the things that they had introduced as replacements for penicillin didn't work anymore. It started to become
Starting point is 00:05:45 like pretty quickly like, oh, this is a real problem. And part of this is because a pharmaceutical salesmen were pushing doctors to use it for everything. And part of it was that doctors used it and it worked in the short term. So they're like, okay, we'll just keep doing that. Like, we don't, they're not, they're not researchers. They're just like your primary care physician. He knows what your heart's supposed to sound like, not like the chemical makeup of like various drugs. Thanks for going to med school.
Starting point is 00:06:15 Why did you even go then? Yeah, for real. As much as it, it'd be nice to just be like, okay, this is primarily an American problem. By the 1950s, the World Health Organization was like, this is a huge issue. And then it just kind of fizzled out. And I would probably just blame that down to like... Classic America. Classic America.
Starting point is 00:06:36 We usually have a say in that kind of stuff. With all this going on, basically shit got bad. And we've been, we're like running. It's like the evolutionary arms race where we're just trying to stay a little bit ahead of these bacteria. But the writing is on the wall that we're kind of at the end of that. that we've exhausted all the different avenues for the materials that we have available for us today. There's only so many ways we can keep changing the things we already know. And that's kind of where we are right now, which is really exciting and happy.
Starting point is 00:07:10 Yeah. Right. Thank you for nothing, mold. So while there are bacteria that are really part of this whole super bug thing, which is not part of the interview, but I'll talk about it just a little bit because it is kind of interesting and kind of creepy and scary. The main bacteria that mostly people are talking about when we're talking about superbugs is enterococcus. And it's kind of the godfather of superbugs. Now, back in the 80s, they were the first one when you heard about the super bugs that people
Starting point is 00:07:42 were usually talking about. Well, they were going to make you an offer you can't refuse. The offer you couldn't refuse was dying. Cool. Yeah. So it's ever... Still can't, actually. Yeah. Now, the thing that's interesting about this bacteria in particular is that evidence kind of suggests that this is actually something that came out of the oceans and onto land with like the stuff that came out of the oceans with me not you personally like we walked out together is what you're saying metaphorically yes yeah and uh it's actually basically basically existed inside like the intestines and stomach or the intestines of basically everything that's lived on the land since land so this is a
Starting point is 00:08:25 This is a turf war. It's a turf war in the sense that we fucked up, and now they're asking us to pay the price. Yeah, so, like, we should have just stayed in the ocean and not found out. No, we came out. They were cool with us coming out. Oh. Like, and what's cool is, like, the bacteria then theoretically, also, like, the bacteria that's in, that this is was also in, like, the stomachs of, like, a T-Rex and, like, the first snake that was, like, on the land. And that's just like kind of cool that we have this weird lineage in relationship with this thing.
Starting point is 00:08:59 Even if it wants to kill us, we've got history. Oh, maybe that's why this is like one of those like longstanding family disputes that's like ended in murder every single generation. Maybe the mass extinctions were all the friends we made along the way. Maybe the asteroid was one of the friends we made along the way. Wow, wouldn't it be great if he visited us today right now? Right this minute. Yes. So Dr. Aisha Khan, who I interview you'll hear in a few minutes,
Starting point is 00:09:27 actually focuses on a fungal disease called Candida Aris, which unlike almost all other fungi on the earth can survive in the human body's high temperature. And the question is, why is this happening? And also, what are we going to do about the fact that it's a super bug fungi? like what is the solution and how we ended up here? And a big part of this problem is climate change. Awesome. Yeah.
Starting point is 00:09:58 So climate change is warmed up the earth. So the things that live on the earth also have to deal with, you know, that selective pressure of heat. And, huh, I wonder if things try to survive as the planet gets hotter if they're better at surviving in our bodies. I don't know. What? than we are? Like, it's going to inhabit my body and, like, wander around? I mean, it's a fungi.
Starting point is 00:10:25 It's not like, it's not SpongeBob Squarepants. But that's kind of what my thought process wasn't that one. No, this is Patrick. Right? No, this is, this is a fungus. They used to be Nash. No, this is Patrick. The lid.
Starting point is 00:10:39 Patrick. Yeah, we talk a bit about what the different pieces that kind of make up this unique cluster fuck puzzle that explains why we're at where we're at. and it's mostly unfortunate and the solutions are simple but also very difficult. Is it solve climate change? And some other things, yeah. And invent new medicine that basically... And some other things, yeah.
Starting point is 00:11:09 Perfect. Just what do you want? Just a few things. How is this one simple? You said it was simple and yet. And yet. Simple at all. Yes.
Starting point is 00:11:17 Classic science fashion. Yes. But yeah, that's pretty much it. I think you guys will enjoy the interview. It's really interesting and not at all depressing. And for some reason, I only do very exciting and optimistic things. Tomorrow, today. Hopefully we're not here for it.
Starting point is 00:11:34 Today? Today. Too late, motherfuckers. Dr. Khan, thanks so much for joining us. Could you tell our audience a little bit about yourself? Yeah, so I'm by training a infectious disease as a scientist and a clinical microbiologist. So basically I specialize in the diagnosis of infection diseases and work with other clinicians like infectious diseases doctors to guide and to use diagnostics and use tools to basically guide
Starting point is 00:12:07 treatment. And so I do both. I guess it's a little interesting for me because I'm both in the world of research, like molecular basic science research where like I'm on the bench and the lab and then also get to see the patient care aspect of it. So I can essentially bridge the bench the bedside. It's a good time. for better or worse, to be an infectious disease, I guess.
Starting point is 00:12:29 Yeah, yeah, I guess people have an odd amount of awareness about what I do now, and no one had any idea of what I did before 20 years. Yeah, your value on the market just went way up. We had talked a little bit before we'd started recording about some of your work, specifically around like bacteria and antibiotic resistance. So for folks, I think a lot of people have heard the term antibiotic resistance. and every once in a while makes its way into the news as like this big like fear thing. And then it just kind of disappears.
Starting point is 00:13:01 And I feel like I've been hearing this for like 10 or 15 years now. And it's like, okay, well, is this really a thing or like what's going on? And, you know, as somebody that spends a lot of time researching it, could you like explain it in like layman's terms? Yeah. So I mean, I guess I mean, everyone sort of has a grasp around evolution or has learned about evolution at some point in school. And I guess learned that evolution allowed us to go from from single, cells, like in those used to be bacteria, to what are now maybe the most destructive, but definitely the most complex species on the planet.
Starting point is 00:13:32 But evolution also is the same process that all microbes, so not just bacteria, but bacteria viruses, fungi and parasites used to evolve to any sort of environmental danger or stress. So they just essentially have to change their genetic code to adapt to the environment. But it's really cool because trying to understand how they do that helps us understand how we evolve and it's essentially studying like a contained ecosystem, right, like a microcosm of life and trying to understand like what are the strategies that they use to prevent themselves from dying essentially. And the way that I do it is trying to understand what what techniques, specific superbugs, like the most, I guess, fatal infections that you can
Starting point is 00:14:16 get in the hospital that are resistant to all antibiotics. So you kind of run out of options and you have no more antibiotics that you can give a patient because the bacteria itself is resistant to all of them. Then taking that bacteria and taking it back to the lab and trying to understand how it's doing it. And it's kind of interesting because a lot of the times it's very intuitive. So for example, if the way that an antibiotic kills the bacteria is by going inside and taking apart like the cell wall, right, like the protective layer that surrounds the cell to protect it, then the way that they become resistant is by basically changing the architecture of actual cell walls. so the antibiotic can't recognize it anymore. And like it's really intelligent, but it's a very, it's a very like intuitive way of thinking
Starting point is 00:14:58 if that's how you would, you know, if there's a target that an antibiotic is coming from, then you just change the target to death. So it's kind of cool to try to like understand how like sand. These are single cells that are able to do this. This is a terrible metaphor, but it like reminds me of like the like cheesy like monster movies and you find out there's like this very basic thing that actually will work against them and you're like independence day. It's like, oh, they have this giant like spot in the middle.
Starting point is 00:15:24 That's just like this really obvious weak point. It is. It is. I mean, and that's like, so one of the, I guess the biggest paper. And I want to say big in quotations as in the highest impact or whatever paper that that that I had that was a culmination of my PhD was published in the proceedings of the National Academy of the Sciences. And that one basically discovered a new mechanism of antibiotic resistance.
Starting point is 00:15:46 So basically discovered the bacteria could do something that we didn't know they could do before. And it was to defend themselves against this like last resort antibiotic that we throw at them when we don't really have many options. And essentially what they do is send out this like sentinel protein called called LyEx, which is like just the sentinel that just goes out into the environment and it's constantly surveying the environment for danger. And whenever it finds an antibiotic in the environment, it basically just like screams back at the cell that there's something coming. So they have a heads up. They have like 12 minutes basically to get a head. start and essentially change the architecture of the entire wall.
Starting point is 00:16:23 So by the time the antibiotic actually arrives there, it doesn't recognize the cell anymore. And so it's like this, like just the idea of like if you could send out a sentinel, that could just be out there surveying, you know, the environment for danger and like prevent it from from actually getting there, you know, by time essentially. That's like a pretty simple concept I think we think of. But the fact that a single cell is able to do. Exactly. Exactly. Like the sensor ones.
Starting point is 00:16:48 Exactly. Yeah. You just have a tell. that goes off to give you some time to like, you know, basically build up reinforcements and adapt to whatever like invaders on the way. So I think it's just interesting that a single cell has kind of figured out how to do that. And that's pretty much how they're able to adapt to just about anything, which is why I guess they're here for so long and we're still dealing with, you know, drug-resistant infections and infections of all kinds.
Starting point is 00:17:11 And at the same time, I mean, we need bacteria to survive. And I think that's something that now people are more aware of that we need. We have good bacteria that we depend on. to be healthy, like in our gut and in our entire body, actually. There's more bacterial cells in a human body than our own cells, I guess. So now we're understanding that there is this, like, balance between existing, you know, in this intricate ecosystem where we need them. But then you also have, when things get thrown off in the environment,
Starting point is 00:17:38 that's when you have, like, the bad ones take over and then you have a pandemic, essentially. Yeah, power vacuum. Yeah. Nothing goes wrong in power vacuum. What's interesting about this, like I said, is that, that it seems like this is like this thing that we've been afraid of forever, that like we're going to have this super bug and like not even talk about like COVID, but like, you know,
Starting point is 00:17:58 an antibiotic resistant thing that is going to just like wipe out people. Like in terms of the work you're doing, is that like a realistic concern or is it as long as we keep working, we can stay one step ahead or almost one step ahead and that's good enough? Well, I think, yeah, yes and no. So I think yes, it's true in that it is going to be, we call it an evolutionary arms race because it is like an eternal. And that's, I think, maybe the only thing that we can do is kind of live in the symbiosis with, you know, everything in our environment and sort of make sure that we're keeping the balance. But the problem is now we live in a society where that balance is being thrown off so often because we have like systems like capitalism that are essentially endlessly extracting and exploiting the earth at a rate where it can't possibly regenerate.
Starting point is 00:18:48 itself. And I think people sometimes that connection is lost, that how does like the whole political realm of our economy, for example, connect to the pandemic? But I think hopefully maybe it is a little bit more clear with COVID. But maybe people just understand that, okay, we never had the systems, for example, like healthcare to take care of people. So when you do have a pandemic, it is obviously going to be devastating because we never invested in public health. But also the whole reason that a virus like SARS-Co-2 emerged in the first place is that, because we have such a drastic change in our environment right now where you have, for example, deforestation where forests are being cut down. And then you suddenly have all these animals that
Starting point is 00:19:29 used to live in the forest that are now coming in close contact with people. And that directly contributes to what's called zoonosis, like zoonotic events, which is when viruses jump hosts, essentially, because now they're being forced to adapt to their environment. And those are not really things that we even anticipate or should be dealing with, right? but are now having to deal with, or for example, rising temperatures. So when things get hotter, that increases the rate at which viruses mutate. So they're basically having more and more shots at being able to adapt to being just as bad as SARS-CoV2 eventually was.
Starting point is 00:20:02 It takes like a million tries to get to be that infective and be that contagious and cause this much damage, right? And it's true that like, I guess if you look at before the 1980s, I would say, like I would say 1980s and anything prior, the only emerging infectious disease, like anything new that popped up that sort of just wrecked havoc was HIV AIDS. That was, I think, historically what we think of. But then everything since then, you know, we've had Zika, we've had Ebola, we've had SARS, we've had H1N1, we've had swine. We've had so many different things pop up in such like rapid succession in the last three decades, essentially. And that is not, that is at a rate that
Starting point is 00:20:42 microbes are evolving that doesn't actually make sense to what they should be doing if they're actually living in a balanced ecosystem. But they're not. So they're under a lot of stress. So imagine just being under it. We're all living in a pressure cooker. And I guess the pandemic led to people feeling that, like what that actually feels like. And bacteria and viruses are dealing with the same thing. They're living in a pressure cooker. And they're having all of these crazy environmental changes happen that they're having to adapt to at such a fast rate. And they're able to do so. and that leads to way, and now we're going to see pandemics
Starting point is 00:21:13 at a much more higher frequency, and this is just one, but we're just basically going to, now if you look at a map of like emerging infectious diseases, there's basically like 300 around the world going on right now. And that's besides, you know, SARS-Co2. So this is just a response to, I guess, a sort of a domino effect of capitalism ultimately.
Starting point is 00:21:34 Yeah, so I feel like there's a couple different pieces that we could unpack here around, And I just want to clarify it a little bit for some of the points you made. So when you're talking about like the fact that zoonotic diseases, these things that transfer from animals to people, I think a lot of people will be like, well, these animals have always existed and people have always existed around them.
Starting point is 00:21:53 But you're pairing that with like the metaphor that I'm thinking of, and this might be wrong, is like when people immigrate to another place, their culture is evolving where they're from. So like take New Jersey Italians, they're my favorite go to. So like they left Italy in the 40s, 30s, 50s around then. And their relationship to Italian culture is much different than an Italian person's
Starting point is 00:22:17 because that Italian person has existed and continued to evolve with that culture currently. While the New Jersey Italian is like a static. Exactly. Yeah. I mean, what you're describing is an ecosystem. Like where some people have lived and that is their home. So yes, indigenous people have coexisted in geographically isolated, communities with other animals, for example, in forests for a long time. Yes, but again,
Starting point is 00:22:43 this is why I guess we think about decolonization as being so important to addressing the roots of so many problems, because indigenous communities focus so much on having this, like, value of land and connection to land and water and foreign fauna and maintaining the ecosystem balance. And essentially, now you have like habitat destruction. So you're actually not just existing around these animals, you're taking away their homes. And then you're using all of the, like, whatever you took away to generate more as a means of production to generate more and more and more, whether it's like fossil fuels or whatever it is beyond what we need. Right. So this is just excessive at this point.
Starting point is 00:23:22 And that basically generally that actually puts animals that would have never seen contact of like cities, like urban urban cities to are now in close, close contact and close proximity to not just humans, but environments that they would have never been in. So this is just like changes in temperature, changes in like humidity, changes in like, changes in like everything that they interact with in their environment, like different minerals, different things that they have to process and different metabolites. So they have to eat different. They have to drink different. They have to live different. And all of those changes, basically, it creates all of these opportunities for them to change
Starting point is 00:23:56 in a way that could eventually be fatal. Yeah, it creates a diversity of selection pressure. Exactly. It is. That's exactly what it's called even in like the scientific term is selective pressure. It creates this like heavy, heavy selective pressure. pressure where they're just now mutating that insanely fast rates because they're being forced to find something that sticks to find like develop a trait to be able to like, for example,
Starting point is 00:24:18 like one of the research that I did is trying to understand the impact of like increase rise in heavy metal in heavy metals in water like mercury or lead or cadmium or arsenic in water and what that does to bacteria. And they ultimately like become resistant to a lot of for antibiotics because because they're getting practice essentially by becoming resistant to metals and because they're having to. And then they're going to do whatever they need to survive. So then finding a new host to propagate in is just sort of like, okay, this is just what this is just the next, you know, point in their evolution.
Starting point is 00:24:51 We've covered like the zoonotic component. We've talked about the selection pressure component. Now I don't know if bacteria have like something similar to like how plants have like plasticity. Yeah. where they'll grow differently based on their conditions and not necessarily in terms of selection, but literally how they, how they form in shape. Yeah.
Starting point is 00:25:12 Does that exist within bacteria as well? Yeah. Yeah. And I think it's just interesting for me to study bacteria because you're studying like the oldest, most simplest life form. So you can then scale that up to being like, you can only imagine then how human beings adapt, basically. And this is why I think it's interesting when people say that, you know, they're like illnesses
Starting point is 00:25:29 exist in a vacuum of their environment because the way bacteria like, do everything as they receive a stimuli from their environment, and then that stimuli literally shapes their response. So how they grow, how fast they grow, the shapes that they even have are like morphological changes they experience are directly related to everything, like, and everything that they exist in. And again, some bacteria exist in nature, but a lot of the ones that exist in nature also exist in us. And sometimes, for example, the things in the environment will decide whether this bacteria stays a commensal, which is like the term that you use for, refer to describe a good bacteria.
Starting point is 00:26:04 And we'll decide whether it's something where mutual benefits. Exactly, mutual benefits. And whether it switches to being a pathogenic like bacteria now, which is that something happened in the environment that actually caused that switch in that one cell to now become an infecting organism when it previously would have just been something that just stayed there. So yeah, the environment basically, just like for everything, for plants for us, it dictates ultimately how their traits are going to manifest.
Starting point is 00:26:28 I'm going to keep picking on this idea of like, because it just fascinates me. this idea of like super bugs with like super antibiotic resistance. Now, I think that the trend that most people think is that we basically kept using antibiotics to the point that they didn't get, they weren't working anymore. Now, is that a fair assessment or is it more complicated than that? It is one tiny piece of the puzzle. So it is true that like I said, we have human beings have altered the ecosystem balance so considerably that it's led to a lot of these emerging super bucks. So one of them is overuse of
Starting point is 00:27:06 antibiotics in clinical settings and in hospitals. And that actually is because all, and I don't know if people know this, but like all physicians, for example, are able to prescribe, and nurses and other healthcare providers are able to prescribe antibiotics. But there is a whole specialty called infectious diseases because they're the only ones that are really trained on how and when to use them properly. So there is this gap where a lot of physicians sometimes don't prescribe the right antibiotics and in the right situations. So then you're basically selecting in the body of a patient, selecting for resistant organisms when you didn't need to even take those antibiotics. We're always talking about people taking antibiotics, for example, when they have a cold, right? So that's a good
Starting point is 00:27:42 example. Or people not finishing their dose. But for example, that's not the only human intervention that's like causing the problem. We, another example is like capitalist mass agriculture and factory farms where one of the most common practices of scaling up production when it comes to meat production is to pump chickens and cows and poultry and like every animal that you can think of with antibiotics. So they end up being just you get more meat out of it. And at the end of the day, what this means is we're consuming. And this is really interesting because then we end up consuming that meat. And even though there might not be like, live bacteria, for example, the genes that are actually giving them the quality of being resistant
Starting point is 00:28:31 to an antibiotic can be in that meat and then be in our gut. And then this cool thing that bacteria can do is just pick up DNA from their environment and just like incorporate it. And Jesus Christ. Right. So this happens like this is why it's led to a lot of a lot of gut bacteria that now are are super drug-resistant and can cause infections. So there's a lot of human practices where we widely use a lot of antimicrobials. Like, for example, even the fact that a lot of times in hospitals, you use like chlorine and a lot of these disinfectants to like clean like a lot of surfaces. But a lot of times those are overused in different environments. And those are also selecting first. So there's a lot of like different points of human intervention that have led to
Starting point is 00:29:18 this. But at the same time, there's this really interesting paper in nature that was published a while back by a collaborator of ours where he just sent a bunch of graduate students out into like near the polarized caps in Canada and they dug through the permafrost and then took these samples and took it back into the lab and essentially did what we call like molecular clock analysis which is to try to understand like how old whatever you're finding is, how old the DNA that you're that you're finding is and discovered that you have the existence of genes that are that that could code resistance to antibiotics that are way, way, way before humans ever existed. So, so basically, this is something that's so ancient. And that's because we get antibiotics from nature.
Starting point is 00:30:02 And I think people know this with like the story of penicillin, right? You know, like we got penicillin because it was just something that a fungi happened to secrete in their environment to prevent themselves from being, you know, from being attacked by this bacteria. And then we isolated that compound and then created a drug out of it. that could be put into patients. And a lot of the antibiotics that we get are natural compounds. And that's partially how we discover new antibiotics. So bacteria are constantly not just evolving to stressors,
Starting point is 00:30:32 but they're constantly evolving to each other in their own ecosystems. So a lot of times these genes, or at least like predecessors of these genes, have existed even before we existed on this planet. That's cool. I mean, it's a little frightening, but it's cool. You brought up the polar cap. So that's like a natural segue to talk about climate change and how, you know, I think most people understand that climate change is like accelerating things, like everything.
Starting point is 00:30:59 But how particularly or how explicitly, I guess, would you describe the relationship between like climate change and like infectious disease as a as an area of study and like what you're seeing, how that plays into what we're talking about, this idea of the reality that we're in some ways, we're in this race with biol. or with bacteria to not die basically. Yeah, and I mean, we can start like in a very big scale. I guess if we think about ourselves and just think about how we were taught to think about what makes up a human being. So we were taught that, okay, there's a bunch of individual cells. And when they come together and there's a bunch of cells, they can make an organ, like a heart or a liver.
Starting point is 00:31:44 And then when a bunch of organs come together, they make up an organ system. So then you have your like circulatory system or your, or your nervous system. And then you need a bunch of those systems to come together to form a full-informed, you know, human being. But then that's not necessarily where that ecosystem ends. You have a bunch of people then that live together to form a community.
Starting point is 00:32:02 You have a bunch of communities then that live in their ecosystem with like flora and fauna to create like ecological niche. And then you have Earth and then you have a solar system. Then you have a galaxy. And then you don't really like stop this, this idea of how things are connected. And it's interesting how we think that. nested systems. Exactly.
Starting point is 00:32:21 Exactly. So the way that we, if you think about it in a human being, like it's impossible to isolate an infection that's in your kidney, for example. So you could have like an infection that starts in your kidney, but if you do nothing about it, it will spread everywhere and kill you. And that's just the arc of how things work because everything's connected. But I think with the pandemic people saw that that's how our whole planet works because it is one organism, one giant organism.
Starting point is 00:32:46 And if you can think about human beings as individual cells, that if you have a infection in one corner, it's going to spread and kill everybody at some point. But like, imagining that in a little bit more complexity, it's if you have problems in one corner of the earth, they have already permeated and affected everybody in ways that we don't even understand. Right. And this is, this is then taking that analogy to understanding how systemic oppression affects everybody. And ultimately, not just infectious diseases, but any sort of disruption of ecosystem balance causes this like butterfly effect that is, is, very difficult then to undo unless you sort of restore the ecosystem in that, in the, in the, in the way
Starting point is 00:33:26 they used to be. And that's essentially what capitalism has done. It's disrupted the ecosystem in such a significant way where if you think about a big picture, we're extracting earth's natural resources at a rate that is so fast that the earth is not able to possibly regenerate at that rate. So. Yeah, what's the earth overshoot day, the day where we've used the amount of energy that's on. I think it's like August. Eighth or something like that. Yeah. And I think so now, like, and I, I mean, having read like all of the papers that led up to the estimate, I think it's, it's pretty reasonable to say that the estimate is about like seven, I think seven point two years or something is how long we have to drastically change the arc of how we do everything, like how we extract from the earth before something before, before mass extinctions just start happening. And we're headed for the for the trajectory. So and I think if you think about one way that can happen, it is. like infectious diseases because the pandemic, I think, was a solid example and a warning to people of what's to come because, again, that same idea of disrupting the ecosystem. And in this case,
Starting point is 00:34:31 through deforestation, habitat destruction, urbanization, and accelerated like a fossil fuel production and all of that contributed. And then you have on the other side no public health infrastructure, no universal health care, no universal income, no universal housing, no universal food, water, nothing. So there's so much of the ecosystem that's just gone haywire. And then you have viruses that are trying to do their best to mutate and to adapt to the environment that is so drastically, for them, such a big stressor. Now they're having to survive in higher temperatures and next to hosts that they've never had to survive in before. And the only way they can do that is by accelerating the mutation rate. And that's literally why we see so many different new infectious diseases that are popping up around the world.
Starting point is 00:35:14 Like I'm sure people heard when we heard of Ebola for the first time or Zika for the first time, like those, we call it emerging infectious diseases because they never existed before. Or things, and this is where antibiotic resistance is kind of scary because things that we used to be able to treat that were not a problem anymore will come back to be untreatable. And an example of that is, for example, anti-vaccine movements that in the United States that have led to measles outbreaks where measles was effectively eradicated in the United States. And it no longer is because you have these isolated outbreaks that happen in pockets of the United States where you have communities with a lot of children that are unvaccinated. So this is when
Starting point is 00:35:51 it's it's so many examples of like the outcome of a unbalanced ecosystem. So like you're talking about like measles and I'm going to ask maybe a stupid question. But so if people continue to allow these outbreaks to happen, it's it's possible and likely eventually the vaccine we have won't work anymore. Yes. So basically it's similar to kind of what we're having with COVID right now, right? like where I think the arc of maybe similar to what people understand with the flu. The reason we need to get a different shot, a flu shot every year is because the strains of specifically with influenza evolves so quickly that the strains that were circulating and causing infections last year are not the same strains as this year.
Starting point is 00:36:30 So you need the vaccine again. And if you then allow for the more infections that you allow, the more chances you allow for something to be contagious to jump hosts to infect other people, the more it's evolving. And it gives it more time to adapt. And more time to adapt means it gets way more different than the vaccine that you already have. And the further and further way it gets from that vaccine, you basically have what's happening now where we're trying to develop booster shots to deal with a micron, right? And we already do that with the flu.
Starting point is 00:36:59 So this is why we actually have booster shots because eventually you need to either remind your ecosystem or the thing has gotten way too different that we can't actually protect against the new thing that's coming. Gotcha. Okay, so you've got all. And I guess it's also, I'll also say it's also scary than for a lot. Like we, with measles specifically and other eradicated infectious diseases, we rely really heavily on most people having been vaccinated to protect the many people
Starting point is 00:37:25 who can't get vaccinated. So there's a lot of people that have, that are immunocompromised, they have compromised immune systems. So we can't give them vaccines because they will actually die. So they can't actually, they'll have adverse responses or adverse reactions to getting vaccine. So the way that we're protecting them is by making sure that a solid proportion of the population, usually something over 70% are vaccinated.
Starting point is 00:37:48 And now, oddly because medical technology has advanced and we're having all these innovations, we actually have a larger immunocompromised populations, for example, cancer patients. And we have more people that have compromised immune systems. So there's more people that are vaccinated and might not be able to get a booster, for example, until much later. So it's just increasing the risk all around when you break that herd immunity. And then to, I guess to my previous question on climate change, you're also now exposing these bacteria to more evolutionary pressure from temperature and also theoretically, permafrost melt and what exists in that ice that is like we were saying with my terrible New Jersey Italians metaphor,
Starting point is 00:38:34 you're bringing these bacteria from a totally different time period and being like, hey, check out this new world evolve differently than everything else because you're starting from someplace else. Yeah. And there's a certain level of like unpredictability when it comes to that because a lot of science is trying to stay ahead by trying to understand how things evolve and trying to understand and predict how things will behave in a different environment. But that's very difficult to do when you're dealing with something that you've never seen
Starting point is 00:38:58 before. And bacteria, partly how they become resistant is not just one way they do that. is by mutating and changing their genetic code so fast that one, you know, introducing one mutation might be the advantageous mutation that gets them to survive in the presence of an antibiotic and then that's selected for and then everybody shares that mutation basically. But that's just one way. In other ways, for example, if there's two bacteria living next to each other and one's already resistant, they can also share genes and just give one, you know, give the gene that gives
Starting point is 00:39:27 resistance to this other bacteria that used to now, that is now resistant that used to previously not be resistant. or a lot of times they can even just pick up genes from their environment. So just open DNA that's not even from another bacteria. And this is what's, I think, really scary when it comes to like different environments, like permafrost melting, for example, that you might not have, I mean, you have bacteria everywhere, right? Like you have bacteria in like, volcanic underwater thermal vents.
Starting point is 00:39:53 You have bacteria living everywhere. But even if you don't have live bacteria, you have DNA and DNA lasts forever. So that DNA being picked up by bacteria that are alive and incorporating into their own genome, that's actually like a real, very real threat. They already used that to evolve and adapt resistance. So all I hear is that I should be very fearful for the future. Yes. And also, I don't, I don't, it is, it has always been interesting to me that this, this evidence of everything I'm saying right now has been around for the last 30 years at the very least. to the level and to the level of robustness and reproducibility that it is, to be able to give us all of these. And I think with climate change, we know that.
Starting point is 00:40:37 There's all of these alarm signs with people being like, we cannot go back very soon. Like it will be deeding. We will be hurling towards extinction. And it is kind of crazy how with the pandemic, I thought that was a moment where there would be some sort of substantial shift, at least in us realizing you cannot create infrastructure from scratch. Like if you have a giant infectious disease that wipes through. like the world you're going to need already to have universal health care and all these things in place to be able to respond adequately. And I thought people understood that, but then it's like
Starting point is 00:41:09 things are quote unquote back to normal. And there is no change in public health infrastructure. There has been no reallocation of funding. There is no universal health care. The dumps of one and nothing has happened. So it is very interesting that it's almost like the universe, I mean, the environment in the ecosystem is giving you all these different warning signs being like, and this was a two-year-long, still ongoing warning sign. And I'm just, I just can't wait until people just say before the seven and a half year mark, okay, maybe we can now do something. Yeah, no, I think we'll go the opposite direction.
Starting point is 00:41:41 And instead we'll just say, we've made it this long. Like, why clearly we can. It's just people will die. Yeah. And that is, I mean, that is the outcome of like what people, I think we saw that in the pandemic, right? It was actually maybe so blatant and so obvious to people. like the inherent ableism to capitalism
Starting point is 00:41:58 that your worth is measured not just based on your productivity and you're like how good of a worker you are but then only certain people are considered valuable under this economy and then everybody's sort of discarded. I'll ask you bluntly where are we in like 20 years around this
Starting point is 00:42:15 is are we in deep shit or are we like hopefully going to turn a corner or like what not only where are we but like what should we be doing I guess to address these very serious and, you know, existential issues. I have, yeah, I have both like, like some things that are hopeful and some things that are, I think a little bit fatalistic, but that's fine. I think it looks a little like Mad Max. I think like we're going to enter.
Starting point is 00:42:43 Yeah, exactly, light, exactly, with like severe resource shortages where we are entering like, essentially where like water and air are going to be commodified, right? Because we're entering an era where everything is going to become, become just, turn into a limited resource essentially, even though it's not, but it's being controlled as such. But also, pandemics are just going to sort of become the norm. And I think people are realizing that maybe you just have to live like this. And they're going to start popping at such a high frequency where we're not going to be able to distinguish when we're out of one. And I think that's sort of the norm that we're going to have to get used to. But then also, I think what's helpful for me
Starting point is 00:43:20 is I felt very alone doing this work for like the last maybe 11 years because they're really like the world of science and medicine and the world of like political organizing was so so, you know, spread apart and like no one talks to each other. But so when I was trying to bridge like science with social justice and geopolitics, it just felt like, oh God, why isn't anyone getting it? But I think in the next 20 years, what we're going to see is emerging of those two worlds. And like people and political movements having to increasingly. like begin to rely on everyone from like scientists and doctors to be able to like support movements, but also like use research based approaches to like solve our problems. And then also everything from like computer engineers and computer scientists to be able to like build, for example, like decentralized infrastructure for us to be able to communicate with each other, independent of state surveillance and things like that. So I think that world of like the separation between science and politics is going to get really murky and we're just going to have to eventually just come together.
Starting point is 00:44:18 Cool. I guess not all bad. No, I'm excited for that. Yeah, there'll be some good parts between the pandemics and whatever else might be going on. For folks that enjoyed listening to you talk, what would you like to plug for your various projects? I know you're really active. Yeah, well, I guess all my work focuses on kind of what we talked about, bridging the world of science and medicine with geopolitics and abolition and anarchy. So the main thing, I guess, if you want to kind of have me break this down a little bit more, I kind of, that's sort of what I do.
Starting point is 00:44:53 I break down complex concepts in accessible ways for everybody is my substack newsletter called Cosmic Anarchy, which is woke scientist.substack.com. And then that's also my Instagram, which is woke scientists, where I just give like little abbreviated versions of that. Awesome. And you have a podcast coming up, right? I do. Yeah, we have a podcast called Disorderland coming out.
Starting point is 00:45:15 Disorder land. Which is actually, it is. It's called disorder land. This is the first time we're talking about it. But yeah, it is. It's actually focused on abolition and psychiatry and psychology and talking about how capitalist psychiatry and psychology are hurting us and how we can turn to alternative models of care that are more community-centered. So, yeah, keep an eye for that.
Starting point is 00:45:34 And also something that I'm doing more now is also just like working with people, I guess, one-on-one and doing workshops and stuff to try to, like, talk about this more and just start bridging these things together already. so we can just skip skip to the next thing. Awesome. Isha, this has been fantastic. Thank you so much. Thank you so much for that.

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